Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_I04
         (877 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP1E11.04c |pal1||membrane associated protein Pal1 |Schizosacc...    28   2.0  
SPAC3G9.14 |sak1||transcriptional repressor Sak1|Schizosaccharom...    26   6.1  

>SPCP1E11.04c |pal1||membrane associated protein Pal1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 425

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
 Frame = +3

Query: 486 SKRPGTVKRPRCWRF--SIGS--APLTSITKIDAQVRGGETRQDYKDTGVPPGSSLVRSP 653
           S+ P T+ RP  +R   S+G+  +PL S +++D      E+  D  +TG+   +S   +P
Sbjct: 316 SRTPNTLNRPSNYRSHSSMGTRRSPLNSPSQLDPISNENESDTDDSNTGLRNRTSPTAAP 375

Query: 654 VP 659
            P
Sbjct: 376 PP 377


>SPAC3G9.14 |sak1||transcriptional repressor
           Sak1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 766

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 17/61 (27%), Positives = 23/61 (37%)
 Frame = +3

Query: 609 KDTGVPPGSSLVRSPVPTLPLTGYLSAFLPSGSVAXXIXHPCRXPXXGXXVPXXLGWLQX 788
           + + V P S    SP P++PL G  +    + S A    HP         VP  L     
Sbjct: 235 RKSAVTPSSDPYNSPPPSIPLLGSQTNLQLAPSFAAPQAHPLPSHLSQSNVPPQLSHSSV 294

Query: 789 P 791
           P
Sbjct: 295 P 295


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,974,768
Number of Sequences: 5004
Number of extensions: 55686
Number of successful extensions: 133
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)