Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_I04
         (877 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    25   0.69 
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    22   8.5  

>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 25.4 bits (53), Expect = 0.69
 Identities = 16/68 (23%), Positives = 24/68 (35%)
 Frame = -3

Query: 710 HASRREKGGQVSRKRQGRNRRAHEGASRGNACIFIVLSGFATSDLSVDFCDARQGGGAYG 531
           H S   KG  +    Q   R   +  S G    F + +    +   +D   +R+G     
Sbjct: 600 HRSSSTKGITIQEPPQWHTRSTEKRVSAGTPAAFNISTTIYENQNCLDASSSRRGSKIGS 659

Query: 530 KTPATRPF 507
            TPA   F
Sbjct: 660 PTPAESTF 667


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 6/21 (28%), Positives = 14/21 (66%)
 Frame = +1

Query: 607 IKIQAFPLEAPSCALLFRPCR 669
           ++++ FP++  SC L+   C+
Sbjct: 164 MELRNFPMDRQSCPLILGSCK 184


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 214,347
Number of Sequences: 438
Number of extensions: 4864
Number of successful extensions: 6
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28402218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)