Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP10_F_I03
(971 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 34 0.026
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 33 0.061
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 32 0.14
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 29 0.75
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 29 0.75
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|... 28 2.3
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 5.3
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 34.3 bits (75), Expect = 0.026
Identities = 26/89 (29%), Positives = 29/89 (32%), Gaps = 8/89 (8%)
Frame = +1
Query: 727 PXXXRGXGXXPPPGXXXGXPX-RFPPPGXXPPVXPPLGXXP----RAGXPGEXXPXPXXP 891
P G PPP P P PPV P G P P P P
Sbjct: 1053 PKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVP 1112
Query: 892 SRGTXGGVLPLPRPAV---XVSXPGGXPP 969
G P+P+P+V V P G PP
Sbjct: 1113 PVPAPSGAPPVPKPSVAAPPVPVPSGAPP 1141
Score = 33.9 bits (74), Expect = 0.035
Identities = 27/87 (31%), Positives = 28/87 (32%), Gaps = 1/87 (1%)
Frame = +1
Query: 712 PHXXXPXXXRGXGXXPPPGXXXGXPXRFPPPGXXPPVXPPLGXXPRAGXPGEXXPXPXXP 891
P P G P P P P PPV P P P E P P P
Sbjct: 1145 PSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVP-KP 1203
Query: 892 SRGTXGGVLPLPRPAVXVSXP-GGXPP 969
S G +P P A V P G PP
Sbjct: 1204 SVGVP--PVPPPSTAPPVPTPSAGLPP 1228
Score = 32.3 bits (70), Expect = 0.11
Identities = 24/78 (30%), Positives = 27/78 (34%), Gaps = 7/78 (8%)
Frame = +1
Query: 757 PPPGXXXGXPXRFPPPGXXPPVXPPLGXXPRAGXPGEXXPXP----XXPSRGTXGGVLPL 924
PP G P P PPV P P P P P P G P+
Sbjct: 1083 PPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPV 1142
Query: 925 PRPAV---XVSXPGGXPP 969
P+P+V V P G PP
Sbjct: 1143 PKPSVAAPPVPAPSGAPP 1160
Score = 32.3 bits (70), Expect = 0.11
Identities = 26/91 (28%), Positives = 29/91 (31%), Gaps = 5/91 (5%)
Frame = +1
Query: 712 PHXXXPXXXRGXGXXPPPGXXXGXPXRFPPPGXXPPVXPPLGXXPRAGXPGEXXPXPXX- 888
P P G P P P P P PPV P P P P P
Sbjct: 1107 PSVAVPPVPAPSGAPPVPKPSVAAPP-VPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPS 1165
Query: 889 ----PSRGTXGGVLPLPRPAVXVSXPGGXPP 969
P G+ P+P+PA V P PP
Sbjct: 1166 VAAPPVPAPSSGIPPVPKPAAGV--PPVPPP 1194
Score = 32.3 bits (70), Expect = 0.11
Identities = 23/69 (33%), Positives = 25/69 (36%)
Frame = +1
Query: 727 PXXXRGXGXXPPPGXXXGXPXRFPPPGXXPPVXPPLGXXPRAGXPGEXXPXPXXPSRGTX 906
P G P P G P PPP PPV P P P P P PS
Sbjct: 1170 PVPAPSSGIPPVPKPAAGVPP-VPPPSEAPPVPKPSVGVPPVPPPSTAPPVPT-PS---- 1223
Query: 907 GGVLPLPRP 933
G+ P+P P
Sbjct: 1224 AGLPPVPVP 1232
Score = 30.7 bits (66), Expect = 0.32
Identities = 20/72 (27%), Positives = 23/72 (31%), Gaps = 1/72 (1%)
Frame = +1
Query: 757 PPPGXXXGXPXRFPPPGXXPPVXPPLGXXP-RAGXPGEXXPXPXXPSRGTXGGVLPLPRP 933
PP P P PPV P P G P P+ + +P P
Sbjct: 1022 PPVPLPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSG 1081
Query: 934 AVXVSXPGGXPP 969
A V P G PP
Sbjct: 1082 APPVPAPSGIPP 1093
Score = 28.7 bits (61), Expect = 1.3
Identities = 16/46 (34%), Positives = 16/46 (34%)
Frame = +1
Query: 757 PPPGXXXGXPXRFPPPGXXPPVXPPLGXXPRAGXPGEXXPXPXXPS 894
P P G P PPP PPV P P P P PS
Sbjct: 1199 PVPKPSVGVPP-VPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAPS 1243
Score = 27.9 bits (59), Expect = 2.3
Identities = 27/90 (30%), Positives = 31/90 (34%), Gaps = 4/90 (4%)
Frame = +1
Query: 712 PHXXXPXXXRGXGXXPPPGXXXGXPXRFPPPGXXPPVXPPLGXXPRAGXPGEXXPXPXXP 891
P P + PP G P P PPV P G P P P P
Sbjct: 1097 PSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPP-VPKPSVAAPPVPAP 1155
Query: 892 SRGTXGGVLPLPRPAV---XVSXP-GGXPP 969
S G P+P+P+V V P G PP
Sbjct: 1156 S-----GAPPVPKPSVAAPPVPAPSSGIPP 1180
Score = 25.8 bits (54), Expect = 9.2
Identities = 15/46 (32%), Positives = 15/46 (32%)
Frame = -2
Query: 865 PXXXPPXGXXXGGAPRXGXXPGGGTGRXXPXXPXGGGXPPPPAXXG 728
P PP GAP P P P G PP PA G
Sbjct: 1046 PTSTPPVPKSSSGAPS-APPPVPAPSSEIPSIPAPSGAPPVPAPSG 1090
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 33.1 bits (72), Expect = 0.061
Identities = 25/90 (27%), Positives = 29/90 (32%), Gaps = 5/90 (5%)
Frame = +1
Query: 712 PHXXXPXXXRGXGXXPPP---GXXXGXPXRFPP--PGXXPPVXPPLGXXPRAGXPGEXXP 876
P P G PPP P PP PG P PPLG R P P
Sbjct: 361 PPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTP 420
Query: 877 XPXXPSRGTXGGVLPLPRPAVXVSXPGGXP 966
PS + P P++ + P P
Sbjct: 421 PSLPPS--APPSLPPSAPPSLPMGAPAAPP 448
Score = 30.3 bits (65), Expect = 0.43
Identities = 21/71 (29%), Positives = 23/71 (32%)
Frame = +1
Query: 757 PPPGXXXGXPXRFPPPGXXPPVXPPLGXXPRAGXPGEXXPXPXXPSRGTXGGVLPLPRPA 936
PPP PP G P PP PR+ P P SR P P PA
Sbjct: 341 PPPRSNAAGSIPLPPQGRSAPPPPP----PRSAPSTGRQPPPLSSSRAVSNP--PAPPPA 394
Query: 937 VXVSXPGGXPP 969
+ PP
Sbjct: 395 IPGRSAPALPP 405
Score = 29.1 bits (62), Expect = 0.99
Identities = 15/44 (34%), Positives = 17/44 (38%)
Frame = +1
Query: 796 PPPGXXPPVXPPLGXXPRAGXPGEXXPXPXXPSRGTXGGVLPLP 927
PPP PP+G G P P P R G +PLP
Sbjct: 315 PPPSRRNRGKPPIGN----GSSNSSLPPPPPPPRSNAAGSIPLP 354
Score = 25.8 bits (54), Expect = 9.2
Identities = 26/87 (29%), Positives = 27/87 (31%), Gaps = 1/87 (1%)
Frame = +1
Query: 712 PHXXXPXXXRGXGXXPPPGXXXGXPXRFPPPGXXPPVXPPLGXXPRAGXPGEXXPXPXXP 891
P P R G PP G PPP PP G P G P P P
Sbjct: 311 PPPPPPPSRRNRGK-PPIGNGSSNSSLPPPP--PPPRSNAAGSIPLP-PQGRSAPPPPPP 366
Query: 892 SRGTXGGVLPLPRPAVX-VSXPGGXPP 969
G P P + VS P PP
Sbjct: 367 RSAPSTGRQPPPLSSSRAVSNPPAPPP 393
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 31.9 bits (69), Expect = 0.14
Identities = 19/71 (26%), Positives = 24/71 (33%)
Frame = +1
Query: 757 PPPGXXXGXPXRFPPPGXXPPVXPPLGXXPRAGXPGEXXPXPXXPSRGTXGGVLPLPRPA 936
PP P P PP PP G +G PG P P + T + +P
Sbjct: 1886 PPMALPKAGPPSAAPTSALPPAGPPAGATAISGNPGMPAPVP-LTGKETAVPLSSMPNAP 1944
Query: 937 VXVSXPGGXPP 969
V+ PP
Sbjct: 1945 PSVASNAKLPP 1955
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 29.5 bits (63), Expect = 0.75
Identities = 27/82 (32%), Positives = 30/82 (36%), Gaps = 5/82 (6%)
Frame = -2
Query: 802 GGGTGRXXPXXPXGGGXPPPPAXXGGEXC--GGXXXXGGGXXXEKPQKXGPXGGXGXXWG 629
GGG+G P GG GGE GG GGG + G GG G G
Sbjct: 194 GGGSGGPPPGPGGFGGF----GGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGG 249
Query: 628 PVGPXXXHP---GXPPGXXGXP 572
+G P G PG G P
Sbjct: 250 GLGGFGGGPGGFGGGPGGHGGP 271
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 29.5 bits (63), Expect = 0.75
Identities = 16/43 (37%), Positives = 16/43 (37%)
Frame = +3
Query: 789 PVPPPGXXPXRGAPPXXXPXGGXXXGXXSPPXSXXXGDXWGGS 917
PVPPP P G PP P G PP GGS
Sbjct: 750 PVPPPA--PIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGS 790
Score = 27.1 bits (57), Expect = 4.0
Identities = 19/65 (29%), Positives = 21/65 (32%), Gaps = 6/65 (9%)
Frame = +1
Query: 757 PPPGXXXGXPXRFPPPGXXPPVXPPLGXXPRAGXP------GEXXPXPXXPSRGTXGGVL 918
PPP P P P PP P +G P P G P P P+ G
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRY 792
Query: 919 PLPRP 933
P P
Sbjct: 793 YAPAP 797
Score = 26.2 bits (55), Expect = 7.0
Identities = 16/55 (29%), Positives = 16/55 (29%)
Frame = +1
Query: 796 PPPGXXPPVXPPLGXXPRAGXPGEXXPXPXXPSRGTXGGVLPLPRPAVXVSXPGG 960
PPP P P P P P P G G P P P GG
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGG 789
Score = 25.8 bits (54), Expect = 9.2
Identities = 20/76 (26%), Positives = 21/76 (27%)
Frame = -2
Query: 937 QRXXXXGEPPHXSPXXXEXGGXXXPXXXPPXGXXXGGAPRXGXXPGGGTGRXXPXXPXGG 758
Q+ PP P P PP GG P PG G
Sbjct: 724 QQKLLLKSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVA----------GA 773
Query: 757 GXPPPPAXXGGEXCGG 710
G PPPP GG
Sbjct: 774 GPPPPPPPPPAVSAGG 789
>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1372
Score = 27.9 bits (59), Expect = 2.3
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +1
Query: 778 GXPXRFPPPGXXPPVXPPL 834
G P + PPP PP PPL
Sbjct: 800 GNPFKAPPPAPLPPPAPPL 818
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 26.6 bits (56), Expect = 5.3
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = +1
Query: 799 PPGXXPPVXPPLGXXPRAGXPGEXXP 876
PPG PP PP G P + P P
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPP 30
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,835,898
Number of Sequences: 5004
Number of extensions: 24483
Number of successful extensions: 161
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 499296500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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