Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_I02
         (947 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    33   0.078
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   1.3  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   3.9  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 32.7 bits (71), Expect = 0.078
 Identities = 27/110 (24%), Positives = 30/110 (27%), Gaps = 2/110 (1%)
 Frame = +2

Query: 623  PXXGXXPLXPSPXXSPKKXGRPKSXVGXPPXXXXKXXP-AXFPXEXLPSXPSPXXRPX-P 796
            P      + P P  S      PK  V  PP       P    P    P  P P   P  P
Sbjct: 1084 PVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVP 1143

Query: 797  XXGXXXXPPSSPXGXTXXAFXXTPPXFXAXPXSGVXPXPPXPGXXFPTPP 946
                   P  +P G                P SG+ P P       P PP
Sbjct: 1144 KPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPP 1193


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
 Frame = +2

Query: 734 PAXFPXEXLPSX--PSPXXRPXPXXGXXXXPPSSP 832
           P+  P E +PS   P+P   P P  G    PP+SP
Sbjct: 237 PSSRPPERVPSLSAPAPPPIPPPSNGTVSSPPNSP 271



 Score = 27.5 bits (58), Expect = 2.9
 Identities = 31/119 (26%), Positives = 38/119 (31%), Gaps = 7/119 (5%)
 Frame = +2

Query: 611 PXRAPXXGXXPLXPSPXXSPKKXGRPKSXVGXPPXXXXKXXPAXFPX---EXLPSXPSPX 781
           P  AP  G  P    P  S +    P +    PP    +  PA  P        + P P 
Sbjct: 366 PRSAPSTGRQP---PPLSSSRAVSNPPAP---PPAIPGRSAPALPPLGNASRTSTPPVPT 419

Query: 782 XRPXPXXGXXXXPPSSPXGXT--XXAFXXTPPXFXAXP--XSGVXPXPPXPGXXFPTPP 946
               P       PPS+P        A    PP     P   +G+   PP P    P PP
Sbjct: 420 PPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLP-PAAPAPP 477


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 24/87 (27%), Positives = 26/87 (29%)
 Frame = +2

Query: 686 PKSXVGXPPXXXXKXXPAXFPXEXLPSXPSPXXRPXPXXGXXXXPPSSPXGXTXXAFXXT 865
           P S    P        P   P       PSP   P         P S P      A   +
Sbjct: 124 PPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKS 183

Query: 866 PPXFXAXPXSGVXPXPPXPGXXFPTPP 946
           PP   + P S V P PP      P PP
Sbjct: 184 PPSAPSLP-SAVPPMPP----KVPPPP 205


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,621,120
Number of Sequences: 5004
Number of extensions: 15482
Number of successful extensions: 33
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 483319012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)