Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP10_F_I02
(947 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 42 9e-04
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 42 9e-04
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 42 9e-04
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 40 0.003
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 40 0.003
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 38 0.014
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 38 0.014
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 38 0.014
Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical pr... 33 0.39
V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein ( Caeno... 33 0.39
J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein ( C.ele... 33 0.39
AC084154-11|AAK29874.1| 350|Caenorhabditis elegans Hypothetical... 32 0.52
U53333-2|AAA96155.1| 299|Caenorhabditis elegans Collagen protei... 32 0.69
AF410845-1|AAL76233.1| 299|Caenorhabditis elegans cuticular col... 32 0.69
Z99773-3|CAE11316.1| 305|Caenorhabditis elegans Hypothetical pr... 31 1.2
U41017-1|AAC48211.1| 343|Caenorhabditis elegans Hypothetical pr... 31 1.2
Z73102-2|CAB63428.1| 341|Caenorhabditis elegans Hypothetical pr... 31 1.6
Z73102-1|CAA97419.1| 298|Caenorhabditis elegans Hypothetical pr... 31 1.6
Z54238-1|CAA90992.2| 281|Caenorhabditis elegans Hypothetical pr... 30 2.8
AF000198-7|AAB53052.1| 418|Caenorhabditis elegans Collagen prot... 30 2.8
U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical pr... 29 3.7
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 29 3.7
U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog (hed... 29 4.9
AF039052-9|AAF98625.1| 302|Caenorhabditis elegans Hypothetical ... 29 4.9
Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical pr... 29 6.4
V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein ( Caeno... 29 6.4
M80650-1|AAA27985.1| 298|Caenorhabditis elegans alpha-collagen ... 29 6.4
J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein ( C.ele... 29 6.4
AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen stru... 29 6.4
U53155-5|AAC48270.1| 303|Caenorhabditis elegans Collagen protei... 28 8.5
AB072926-1|BAB69889.1| 303|Caenorhabditis elegans collagen prot... 28 8.5
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 41.5 bits (93), Expect = 9e-04
Identities = 29/106 (27%), Positives = 32/106 (30%), Gaps = 4/106 (3%)
Frame = +2
Query: 617 RAPXXGXXPLXPSPXXSPKKXGR----PKSXVGXPPXXXXKXXPAXFPXEXLPSXPSPXX 784
+AP G P P P SP G P G PP P P P P
Sbjct: 230 QAPPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPP--PPTGSPPPPPAGG 287
Query: 785 RPXPXXGXXXXPPSSPXGXTXXAFXXTPPXFXAXPXSGVXPXPPXP 922
P P PP P G P + P +G PP P
Sbjct: 288 SPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPP 333
Score = 30.7 bits (66), Expect = 1.6
Identities = 20/71 (28%), Positives = 22/71 (30%), Gaps = 4/71 (5%)
Frame = +2
Query: 746 PXEXLPSXPSPXXRPXPXXGXXXXPPSSPXGXTXXAFXXTPPX----FXAXPXSGVXPXP 913
P P P P P G PP G +PP P +G P P
Sbjct: 232 PPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPP 291
Query: 914 PXPGXXFPTPP 946
P G P PP
Sbjct: 292 PRAGSPPPPPP 302
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 41.5 bits (93), Expect = 9e-04
Identities = 29/106 (27%), Positives = 32/106 (30%), Gaps = 4/106 (3%)
Frame = +2
Query: 617 RAPXXGXXPLXPSPXXSPKKXGR----PKSXVGXPPXXXXKXXPAXFPXEXLPSXPSPXX 784
+AP G P P P SP G P G PP P P P P
Sbjct: 251 QAPPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPP--PPTGSPPPPPAGG 308
Query: 785 RPXPXXGXXXXPPSSPXGXTXXAFXXTPPXFXAXPXSGVXPXPPXP 922
P P PP P G P + P +G PP P
Sbjct: 309 SPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPP 354
Score = 30.7 bits (66), Expect = 1.6
Identities = 20/71 (28%), Positives = 22/71 (30%), Gaps = 4/71 (5%)
Frame = +2
Query: 746 PXEXLPSXPSPXXRPXPXXGXXXXPPSSPXGXTXXAFXXTPPX----FXAXPXSGVXPXP 913
P P P P P G PP G +PP P +G P P
Sbjct: 253 PPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPP 312
Query: 914 PXPGXXFPTPP 946
P G P PP
Sbjct: 313 PRAGSPPPPPP 323
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 41.5 bits (93), Expect = 9e-04
Identities = 29/106 (27%), Positives = 32/106 (30%), Gaps = 4/106 (3%)
Frame = +2
Query: 617 RAPXXGXXPLXPSPXXSPKKXGR----PKSXVGXPPXXXXKXXPAXFPXEXLPSXPSPXX 784
+AP G P P P SP G P G PP P P P P
Sbjct: 236 QAPPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPP--PPTGSPPPPPAGG 293
Query: 785 RPXPXXGXXXXPPSSPXGXTXXAFXXTPPXFXAXPXSGVXPXPPXP 922
P P PP P G P + P +G PP P
Sbjct: 294 SPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPP 339
Score = 30.7 bits (66), Expect = 1.6
Identities = 20/71 (28%), Positives = 22/71 (30%), Gaps = 4/71 (5%)
Frame = +2
Query: 746 PXEXLPSXPSPXXRPXPXXGXXXXPPSSPXGXTXXAFXXTPPX----FXAXPXSGVXPXP 913
P P P P P G PP G +PP P +G P P
Sbjct: 238 PPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPP 297
Query: 914 PXPGXXFPTPP 946
P G P PP
Sbjct: 298 PRAGSPPPPPP 308
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 39.9 bits (89), Expect = 0.003
Identities = 28/102 (27%), Positives = 34/102 (33%)
Frame = +2
Query: 641 PLXPSPXXSPKKXGRPKSXVGXPPXXXXKXXPAXFPXEXLPSXPSPXXRPXPXXGXXXXP 820
P+ P+P +P+ P S + PP P P P R P G P
Sbjct: 276 PMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGP-PGMGGMP 334
Query: 821 PSSPXGXTXXAFXXTPPXFXAXPXSGVXPXPPXPGXXFPTPP 946
P P G PP P +G PP P P PP
Sbjct: 335 PPPPPGMRYPGGMPPPPP-PRYPSAGPGMYPPPPPSRPPAPP 375
Score = 30.7 bits (66), Expect = 1.6
Identities = 20/76 (26%), Positives = 24/76 (31%)
Frame = +1
Query: 646 GXXPXXEPQKXRAPQVXGGXXPXQXXXRXPGXFPPXXPPLXXLPLXPAPXXXRXXXVPPX 825
G P P + P + G P R PG PP P P P+ PP
Sbjct: 315 GMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPP-----PRYPSAGPGMYPPPPPS 369
Query: 826 LPXXXNVGRFXLXXPP 873
P G + PP
Sbjct: 370 RPPAPPSGHGMIPPPP 385
Score = 29.1 bits (62), Expect = 4.9
Identities = 27/107 (25%), Positives = 32/107 (29%), Gaps = 1/107 (0%)
Frame = +2
Query: 605 ITPXRAPXXGXXPLXPSPXXSPKKXGRPKSXVG-XPPXXXXKXXPAXFPXEXLPSXPSPX 781
+TP P P P P + P G PP + P +P P P
Sbjct: 283 MTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGM--GGMPPPPPPG 340
Query: 782 XRPXPXXGXXXXPPSSPXGXTXXAFXXTPPXFXAXPXSGVXPXPPXP 922
R P PP P + PP P SG PP P
Sbjct: 341 MR-YPGGMPPPPPPRYPSAG-PGMYPPPPPSRPPAPPSGHGMIPPPP 385
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 39.9 bits (89), Expect = 0.003
Identities = 28/102 (27%), Positives = 34/102 (33%)
Frame = +2
Query: 641 PLXPSPXXSPKKXGRPKSXVGXPPXXXXKXXPAXFPXEXLPSXPSPXXRPXPXXGXXXXP 820
P+ P+P +P+ P S + PP P P P R P G P
Sbjct: 286 PMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGP-PGMGGMP 344
Query: 821 PSSPXGXTXXAFXXTPPXFXAXPXSGVXPXPPXPGXXFPTPP 946
P P G PP P +G PP P P PP
Sbjct: 345 PPPPPGMRYPGGMPPPPP-PRYPSAGPGMYPPPPPSRPPAPP 385
Score = 30.7 bits (66), Expect = 1.6
Identities = 20/76 (26%), Positives = 24/76 (31%)
Frame = +1
Query: 646 GXXPXXEPQKXRAPQVXGGXXPXQXXXRXPGXFPPXXPPLXXLPLXPAPXXXRXXXVPPX 825
G P P + P + G P R PG PP P P P+ PP
Sbjct: 325 GMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPP-----PRYPSAGPGMYPPPPPS 379
Query: 826 LPXXXNVGRFXLXXPP 873
P G + PP
Sbjct: 380 RPPAPPSGHGMIPPPP 395
Score = 29.1 bits (62), Expect = 4.9
Identities = 27/107 (25%), Positives = 32/107 (29%), Gaps = 1/107 (0%)
Frame = +2
Query: 605 ITPXRAPXXGXXPLXPSPXXSPKKXGRPKSXVG-XPPXXXXKXXPAXFPXEXLPSXPSPX 781
+TP P P P P + P G PP + P +P P P
Sbjct: 293 MTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGM--GGMPPPPPPG 350
Query: 782 XRPXPXXGXXXXPPSSPXGXTXXAFXXTPPXFXAXPXSGVXPXPPXP 922
R P PP P + PP P SG PP P
Sbjct: 351 MR-YPGGMPPPPPPRYPSAG-PGMYPPPPPSRPPAPPSGHGMIPPPP 395
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 37.5 bits (83), Expect = 0.014
Identities = 30/105 (28%), Positives = 30/105 (28%)
Frame = +2
Query: 632 GXXPLXPSPXXSPKKXGRPKSXVGXPPXXXXKXXPAXFPXEXLPSXPSPXXRPXPXXGXX 811
G L P P G P G PP P P P P P P G
Sbjct: 702 GSSALPPITGGPPPPPGLPPITGGPPPPPPPGGLP---PITGGPPPPPPPGGLPPISGGP 758
Query: 812 XXPPSSPXGXTXXAFXXTPPXFXAXPXSGVXPXPPXPGXXFPTPP 946
PP P G P F P P PP PG P P
Sbjct: 759 PPPPPPPGGCPPPPPPPPPGGFKGGP-----PPPPPPGMFAPMAP 798
Score = 34.7 bits (76), Expect = 0.098
Identities = 28/101 (27%), Positives = 30/101 (29%)
Frame = +2
Query: 605 ITPXRAPXXGXXPLXPSPXXSPKKXGRPKSXVGXPPXXXXKXXPAXFPXEXLPSXPSPXX 784
IT P G P+ P P G P G PP P P P P
Sbjct: 709 ITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPP----PGGLP----PISGGPPP 760
Query: 785 RPXPXXGXXXXPPSSPXGXTXXAFXXTPPXFXAXPXSGVXP 907
P P G PP P G PP P + V P
Sbjct: 761 PPPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMFAPMAPVIP 801
Score = 29.5 bits (63), Expect = 3.7
Identities = 27/109 (24%), Positives = 30/109 (27%), Gaps = 7/109 (6%)
Frame = +2
Query: 641 PLXPSPXXSPKKXGRPKSXVGX----PPXXXXKXXPAXFPXEXLPSXPSPXXRPXPXXGX 808
P P P + P + G PP P P P P P
Sbjct: 681 PKIPLPPPTKMNLSAPSTSAGGSSALPPITGGPPPPPGLPPITGGPPPPPPPGGLPPITG 740
Query: 809 XXXPPSSPXGXTXXAFXXTPPXFXAXPXSGVXPXPPXPGXXF---PTPP 946
PP P G + PP P P PP P F P PP
Sbjct: 741 GPPPPPPPGGLPPISGGPPPPP--PPPGGCPPPPPPPPPGGFKGGPPPP 787
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 37.5 bits (83), Expect = 0.014
Identities = 30/105 (28%), Positives = 30/105 (28%)
Frame = +2
Query: 632 GXXPLXPSPXXSPKKXGRPKSXVGXPPXXXXKXXPAXFPXEXLPSXPSPXXRPXPXXGXX 811
G L P P G P G PP P P P P P P G
Sbjct: 702 GSSALPPITGGPPPPPGLPPITGGPPPPPPPGGLP---PITGGPPPPPPPGGLPPISGGP 758
Query: 812 XXPPSSPXGXTXXAFXXTPPXFXAXPXSGVXPXPPXPGXXFPTPP 946
PP P G P F P P PP PG P P
Sbjct: 759 PPPPPPPGGCPPPPPPPPPGGFKGGP-----PPPPPPGMFAPMAP 798
Score = 34.7 bits (76), Expect = 0.098
Identities = 28/101 (27%), Positives = 30/101 (29%)
Frame = +2
Query: 605 ITPXRAPXXGXXPLXPSPXXSPKKXGRPKSXVGXPPXXXXKXXPAXFPXEXLPSXPSPXX 784
IT P G P+ P P G P G PP P P P P
Sbjct: 709 ITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPP----PGGLP----PISGGPPP 760
Query: 785 RPXPXXGXXXXPPSSPXGXTXXAFXXTPPXFXAXPXSGVXP 907
P P G PP P G PP P + V P
Sbjct: 761 PPPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMFAPMAPVIP 801
Score = 29.5 bits (63), Expect = 3.7
Identities = 27/109 (24%), Positives = 30/109 (27%), Gaps = 7/109 (6%)
Frame = +2
Query: 641 PLXPSPXXSPKKXGRPKSXVGX----PPXXXXKXXPAXFPXEXLPSXPSPXXRPXPXXGX 808
P P P + P + G PP P P P P P
Sbjct: 681 PKIPLPPPTKMNLSAPSTSAGGSSALPPITGGPPPPPGLPPITGGPPPPPPPGGLPPITG 740
Query: 809 XXXPPSSPXGXTXXAFXXTPPXFXAXPXSGVXPXPPXPGXXF---PTPP 946
PP P G + PP P P PP P F P PP
Sbjct: 741 GPPPPPPPGGLPPISGGPPPPP--PPPGGCPPPPPPPPPGGFKGGPPPP 787
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 37.5 bits (83), Expect = 0.014
Identities = 30/105 (28%), Positives = 30/105 (28%)
Frame = +2
Query: 632 GXXPLXPSPXXSPKKXGRPKSXVGXPPXXXXKXXPAXFPXEXLPSXPSPXXRPXPXXGXX 811
G L P P G P G PP P P P P P P G
Sbjct: 285 GSSALPPITGGPPPPPGLPPITGGPPPPPPPGGLP---PITGGPPPPPPPGGLPPISGGP 341
Query: 812 XXPPSSPXGXTXXAFXXTPPXFXAXPXSGVXPXPPXPGXXFPTPP 946
PP P G P F P P PP PG P P
Sbjct: 342 PPPPPPPGGCPPPPPPPPPGGFKGGP-----PPPPPPGMFAPMAP 381
Score = 34.7 bits (76), Expect = 0.098
Identities = 28/101 (27%), Positives = 30/101 (29%)
Frame = +2
Query: 605 ITPXRAPXXGXXPLXPSPXXSPKKXGRPKSXVGXPPXXXXKXXPAXFPXEXLPSXPSPXX 784
IT P G P+ P P G P G PP P P P P
Sbjct: 292 ITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPP----PGGLP----PISGGPPP 343
Query: 785 RPXPXXGXXXXPPSSPXGXTXXAFXXTPPXFXAXPXSGVXP 907
P P G PP P G PP P + V P
Sbjct: 344 PPPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMFAPMAPVIP 384
Score = 29.5 bits (63), Expect = 3.7
Identities = 27/109 (24%), Positives = 30/109 (27%), Gaps = 7/109 (6%)
Frame = +2
Query: 641 PLXPSPXXSPKKXGRPKSXVGX----PPXXXXKXXPAXFPXEXLPSXPSPXXRPXPXXGX 808
P P P + P + G PP P P P P P
Sbjct: 264 PKIPLPPPTKMNLSAPSTSAGGSSALPPITGGPPPPPGLPPITGGPPPPPPPGGLPPITG 323
Query: 809 XXXPPSSPXGXTXXAFXXTPPXFXAXPXSGVXPXPPXPGXXF---PTPP 946
PP P G + PP P P PP P F P PP
Sbjct: 324 GPPPPPPPGGLPPISGGPPPPP--PPPGGCPPPPPPPPPGGFKGGPPPP 370
>Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical
protein F23H12.4 protein.
Length = 301
Score = 32.7 bits (71), Expect = 0.39
Identities = 28/101 (27%), Positives = 32/101 (31%)
Frame = +2
Query: 641 PLXPSPXXSPKKXGRPKSXVGXPPXXXXKXXPAXFPXEXLPSXPSPXXRPXPXXGXXXXP 820
P P P +P K G+P G P P P E P+ P P +P P
Sbjct: 104 PGPPGPAGAPGKPGKP-GRPGAPGTPGTPGKPPVAPCE--PTTPPPC-KPCPQGPPGPPG 159
Query: 821 PSSPXGXTXXAFXXTPPXFXAXPXSGVXPXPPXPGXXFPTP 943
P G A P A P S PP P P
Sbjct: 160 PPGAPGDPGEAGTPGRPGTDAAPGSPGPRGPPGPAGEAGAP 200
Score = 32.3 bits (70), Expect = 0.52
Identities = 25/106 (23%), Positives = 30/106 (28%), Gaps = 1/106 (0%)
Frame = +2
Query: 608 TPXRAPXXGXXPLXPSPXXS-PKKXGRPKSXVGXPPXXXXKXXPAXFPXEXLPSXPSPXX 784
TP + P P P P P+ P G P P + P P P
Sbjct: 130 TPGKPPVAPCEPTTPPPCKPCPQGPPGPPGPPGAPGDPGEAGTPGRPGTDAAPGSPGPRG 189
Query: 785 RPXPXXGXXXXPPSSPXGXTXXAFXXTPPXFXAXPXSGVXPXPPXP 922
P P P+ G + T P P P PP P
Sbjct: 190 PPGPAGEAGAPGPAGEPGTPAISEPLT-PGAPGEPGDSGPPGPPGP 234
>V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-1 coding for a collagen.
).
Length = 296
Score = 32.7 bits (71), Expect = 0.39
Identities = 28/101 (27%), Positives = 32/101 (31%)
Frame = +2
Query: 641 PLXPSPXXSPKKXGRPKSXVGXPPXXXXKXXPAXFPXEXLPSXPSPXXRPXPXXGXXXXP 820
P P P +P K G+P G P P P E P+ P P +P P
Sbjct: 99 PGPPGPAGAPGKPGKP-GRPGAPGTPGTPGKPPVAPCE--PTTPPPC-KPCPQGPPGPPG 154
Query: 821 PSSPXGXTXXAFXXTPPXFXAXPXSGVXPXPPXPGXXFPTP 943
P G A P A P S PP P P
Sbjct: 155 PPGAPGDPGEAGTPGRPGTDAAPGSPGPRGPPGPAGEAGAP 195
Score = 32.3 bits (70), Expect = 0.52
Identities = 25/106 (23%), Positives = 30/106 (28%), Gaps = 1/106 (0%)
Frame = +2
Query: 608 TPXRAPXXGXXPLXPSPXXS-PKKXGRPKSXVGXPPXXXXKXXPAXFPXEXLPSXPSPXX 784
TP + P P P P P+ P G P P + P P P
Sbjct: 125 TPGKPPVAPCEPTTPPPCKPCPQGPPGPPGPPGAPGDPGEAGTPGRPGTDAAPGSPGPRG 184
Query: 785 RPXPXXGXXXXPPSSPXGXTXXAFXXTPPXFXAXPXSGVXPXPPXP 922
P P P+ G + T P P P PP P
Sbjct: 185 PPGPAGEAGAPGPAGEPGTPAISEPLT-PGAPGEPGDSGPPGPPGP 229
>J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 1 (col-1) gene, complete
cds. ).
Length = 296
Score = 32.7 bits (71), Expect = 0.39
Identities = 28/101 (27%), Positives = 32/101 (31%)
Frame = +2
Query: 641 PLXPSPXXSPKKXGRPKSXVGXPPXXXXKXXPAXFPXEXLPSXPSPXXRPXPXXGXXXXP 820
P P P +P K G+P G P P P E P+ P P +P P
Sbjct: 99 PGPPGPAGAPGKPGKP-GRPGAPGTPGTPGKPPVAPCE--PTTPPPC-KPCPQGPPGPPG 154
Query: 821 PSSPXGXTXXAFXXTPPXFXAXPXSGVXPXPPXPGXXFPTP 943
P G A P A P S PP P P
Sbjct: 155 PPGAPGDPGEAGTPGRPGTDAAPGSPGPRGPPGPAGEAGAP 195
Score = 32.3 bits (70), Expect = 0.52
Identities = 25/106 (23%), Positives = 30/106 (28%), Gaps = 1/106 (0%)
Frame = +2
Query: 608 TPXRAPXXGXXPLXPSPXXS-PKKXGRPKSXVGXPPXXXXKXXPAXFPXEXLPSXPSPXX 784
TP + P P P P P+ P G P P + P P P
Sbjct: 125 TPGKPPVAPCEPTTPPPCKPCPQGPPGPPGPPGAPGDPGEAGTPGRPGTDAAPGSPGPRG 184
Query: 785 RPXPXXGXXXXPPSSPXGXTXXAFXXTPPXFXAXPXSGVXPXPPXP 922
P P P+ G + T P P P PP P
Sbjct: 185 PPGPAGEAGAPGPAGEPGTPAISEPLT-PGAPGEPGDSGPPGPPGP 229
>AC084154-11|AAK29874.1| 350|Caenorhabditis elegans Hypothetical
protein Y22D7AR.1 protein.
Length = 350
Score = 32.3 bits (70), Expect = 0.52
Identities = 23/93 (24%), Positives = 28/93 (30%), Gaps = 2/93 (2%)
Frame = +2
Query: 650 PSPXXSPKKXGRPKSXVGXPPXXXXKXXPAXFPXEXLPSXPSPXXRPXPXXGXXXXPPSS 829
P P +PK +PK P + P P P+P +P P P
Sbjct: 193 PKPKPNPKPEPKPKPKPEPKPKPKPEPKPKPKPKPKPKPKPNPNPKPEPKPKPKPKPKPE 252
Query: 830 PXGXTXXAFXXTP-PXFXAXPXSGVXPXP-PXP 922
P T P P P P P P P
Sbjct: 253 PKPKTKLKSEPKPKPKLKPKPKPNPKPEPNPMP 285
Score = 31.5 bits (68), Expect = 0.91
Identities = 16/61 (26%), Positives = 21/61 (34%)
Frame = +2
Query: 650 PSPXXSPKKXGRPKSXVGXPPXXXXKXXPAXFPXEXLPSXPSPXXRPXPXXGXXXXPPSS 829
P P PK +PK+ + P K P P P P +P P P +
Sbjct: 243 PKPKPKPKPEPKPKTKLKSEPKPKPKLKPKPKPNPKPEPNPMPELKPKPKHKPNSRPKPN 302
Query: 830 P 832
P
Sbjct: 303 P 303
Score = 30.3 bits (65), Expect = 2.1
Identities = 16/61 (26%), Positives = 18/61 (29%)
Frame = +2
Query: 650 PSPXXSPKKXGRPKSXVGXPPXXXXKXXPAXFPXEXLPSXPSPXXRPXPXXGXXXXPPSS 829
P P PK +PK P K P P P P +P P P
Sbjct: 181 PDPKPKPKPKPKPKPKPNPKPEPKPKPKPEPKPKPKPEPKPKPKPKPKPKPKPNPNPKPE 240
Query: 830 P 832
P
Sbjct: 241 P 241
Score = 30.3 bits (65), Expect = 2.1
Identities = 16/61 (26%), Positives = 18/61 (29%)
Frame = +2
Query: 650 PSPXXSPKKXGRPKSXVGXPPXXXXKXXPAXFPXEXLPSXPSPXXRPXPXXGXXXXPPSS 829
P P PK +PK P K P P P P +P P P
Sbjct: 183 PKPKPKPKPKPKPKPNPKPEPKPKPKPEPKPKPKPEPKPKPKPKPKPKPKPNPNPKPEPK 242
Query: 830 P 832
P
Sbjct: 243 P 243
Score = 29.1 bits (62), Expect = 4.9
Identities = 16/61 (26%), Positives = 17/61 (27%)
Frame = +2
Query: 650 PSPXXSPKKXGRPKSXVGXPPXXXXKXXPAXFPXEXLPSXPSPXXRPXPXXGXXXXPPSS 829
P P PK +PK P K P P P P P P P
Sbjct: 165 PEPKPKPKPEPKPKPKPDPKPKPKPKPKPKPKPNPKPEPKPKPKPEPKPKPKPEPKPKPK 224
Query: 830 P 832
P
Sbjct: 225 P 225
Score = 28.7 bits (61), Expect = 6.4
Identities = 16/61 (26%), Positives = 17/61 (27%)
Frame = +2
Query: 650 PSPXXSPKKXGRPKSXVGXPPXXXXKXXPAXFPXEXLPSXPSPXXRPXPXXGXXXXPPSS 829
P P PK PK P K P P P P +P P P
Sbjct: 163 PKPEPKPKPKPEPKPKPKPDPKPKPKPKPKPKPKPNPKPEPKPKPKPEPKPKPKPEPKPK 222
Query: 830 P 832
P
Sbjct: 223 P 223
Score = 28.7 bits (61), Expect = 6.4
Identities = 16/61 (26%), Positives = 18/61 (29%)
Frame = +2
Query: 650 PSPXXSPKKXGRPKSXVGXPPXXXXKXXPAXFPXEXLPSXPSPXXRPXPXXGXXXXPPSS 829
P P PK +PK P K P P P P +P P P
Sbjct: 179 PKPDPKPKPKPKPKPKPKPNPKPEPKPKPKPEPKPKPKPEPKPKPKPKPKPKPKPNPNPK 238
Query: 830 P 832
P
Sbjct: 239 P 239
Score = 28.7 bits (61), Expect = 6.4
Identities = 16/61 (26%), Positives = 17/61 (27%)
Frame = +2
Query: 650 PSPXXSPKKXGRPKSXVGXPPXXXXKXXPAXFPXEXLPSXPSPXXRPXPXXGXXXXPPSS 829
P P PK PK P K P P P P +P P P
Sbjct: 187 PKPKPKPKPKPNPKPEPKPKPKPEPKPKPKPEPKPKPKPKPKPKPKPNPNPKPEPKPKPK 246
Query: 830 P 832
P
Sbjct: 247 P 247
Score = 28.7 bits (61), Expect = 6.4
Identities = 16/61 (26%), Positives = 19/61 (31%)
Frame = +2
Query: 650 PSPXXSPKKXGRPKSXVGXPPXXXXKXXPAXFPXEXLPSXPSPXXRPXPXXGXXXXPPSS 829
P+P PK +PK P K P P P+P P P P
Sbjct: 235 PNPKPEPKPKPKPKPKPEPKPKTKLKSEPKPKPKLKPKPKPNPKPEPNPMPELKPKPKHK 294
Query: 830 P 832
P
Sbjct: 295 P 295
>U53333-2|AAA96155.1| 299|Caenorhabditis elegans Collagen protein
34 protein.
Length = 299
Score = 31.9 bits (69), Expect = 0.69
Identities = 27/94 (28%), Positives = 30/94 (31%)
Frame = +2
Query: 641 PLXPSPXXSPKKXGRPKSXVGXPPXXXXKXXPAXFPXEXLPSXPSPXXRPXPXXGXXXXP 820
P P P +P K GRP G P P P E P P P +P P
Sbjct: 102 PGPPGPAGTPGKPGRPGKP-GAPGLPGNPGRPPQQPCE--PITPPP-CKPCPQGPPGPPG 157
Query: 821 PSSPXGXTXXAFXXTPPXFXAXPXSGVXPXPPXP 922
P P G + P A P PP P
Sbjct: 158 PPGPPGDSGEPGSPGLPGQDAAPGEPGPKGPPGP 191
>AF410845-1|AAL76233.1| 299|Caenorhabditis elegans cuticular
collagen RAM-4 protein.
Length = 299
Score = 31.9 bits (69), Expect = 0.69
Identities = 27/94 (28%), Positives = 30/94 (31%)
Frame = +2
Query: 641 PLXPSPXXSPKKXGRPKSXVGXPPXXXXKXXPAXFPXEXLPSXPSPXXRPXPXXGXXXXP 820
P P P +P K GRP G P P P E P P P +P P
Sbjct: 102 PGPPGPAGTPGKPGRPGKP-GAPGLPGNPGRPPQQPCE--PITPPP-CKPCPQGPPGPPG 157
Query: 821 PSSPXGXTXXAFXXTPPXFXAXPXSGVXPXPPXP 922
P P G + P A P PP P
Sbjct: 158 PPGPPGDSGEPGSPGLPGQDAAPGEPGPKGPPGP 191
>Z99773-3|CAE11316.1| 305|Caenorhabditis elegans Hypothetical
protein H06A10.2 protein.
Length = 305
Score = 31.1 bits (67), Expect = 1.2
Identities = 23/80 (28%), Positives = 26/80 (32%), Gaps = 3/80 (3%)
Frame = +2
Query: 641 PLXPSPXXSPKKXGRPKSXVGXPPXXXXKXXPAXFPXEXL---PSXPSPXXRPXPXXGXX 811
P P P SP K G+P G P A P E P P P P P
Sbjct: 109 PGPPGPGGSPGKPGKPGKP-GAPGAPGAAGKGASAPCEAKTPPPCQPCPAGPPGPPGPDG 167
Query: 812 XXPPSSPXGXTXXAFXXTPP 871
P+ P G +PP
Sbjct: 168 PAGPAGPDGEAGSPAAPSPP 187
>U41017-1|AAC48211.1| 343|Caenorhabditis elegans Hypothetical
protein T26C11.2 protein.
Length = 343
Score = 31.1 bits (67), Expect = 1.2
Identities = 26/99 (26%), Positives = 30/99 (30%), Gaps = 1/99 (1%)
Frame = +2
Query: 650 PSPXXSPKKXGRPKSXVGXPPXXXXKXXPAXFPXEXLPSXPSPXXRPXPXXGXXXXPPSS 829
PSP PK +PK P K P FP L P P +P P P
Sbjct: 32 PSPMPFPKPMPKPKPK----PKPMPKHKPKPFPKPMLFPKPMPKHKPKPFPKPMLFPKPM 87
Query: 830 P-XGXTXXAFXXTPPXFXAXPXSGVXPXPPXPGXXFPTP 943
P + + P P P P FP P
Sbjct: 88 PFPKPMPKSKPKSEPFPNPMPFPKPKPMPKHKPKPFPKP 126
Score = 29.5 bits (63), Expect = 3.7
Identities = 17/61 (27%), Positives = 18/61 (29%)
Frame = +2
Query: 650 PSPXXSPKKXGRPKSXVGXPPXXXXKXXPAXFPXEXLPSXPSPXXRPXPXXGXXXXPPSS 829
P P PK P P K P FP L P P +P P P
Sbjct: 92 PMPKSKPKSEPFPNPMPFPKPKPMPKHKPKPFPKPMLFPKPMPIPKPMPFPKPMLFPKPM 151
Query: 830 P 832
P
Sbjct: 152 P 152
Score = 28.7 bits (61), Expect = 6.4
Identities = 22/75 (29%), Positives = 23/75 (30%), Gaps = 1/75 (1%)
Frame = +2
Query: 611 PXRAPXXGXXP-LXPSPXXSPKKXGRPKSXVGXPPXXXXKXXPAXFPXEXLPSXPSPXXR 787
P P P L P P PK PK P K P FP L P P +
Sbjct: 188 PKHKPKPFPKPMLFPKPMPIPKPMPFPKPM----PKPMPKHKPKPFPKPMLFPKPMPIPK 243
Query: 788 PXPXXGXXXXPPSSP 832
P P P P
Sbjct: 244 PMPFPKPMPKPKPKP 258
>Z73102-2|CAB63428.1| 341|Caenorhabditis elegans Hypothetical
protein B0035.1b protein.
Length = 341
Score = 30.7 bits (66), Expect = 1.6
Identities = 19/79 (24%), Positives = 22/79 (27%)
Frame = +2
Query: 707 PPXXXXKXXPAXFPXEXLPSXPSPXXRPXPXXGXXXXPPSSPXGXTXXAFXXTPPXFXAX 886
PP P FP +P PS P G P P +
Sbjct: 109 PPMPTPMPFPQHFPFPGMPPMPSGPPPPSMAYGMPPMPSGMMPPRGMPGAYPPPRGYPPA 168
Query: 887 PXSGVXPXPPXPGXXFPTP 943
P GV PP +P P
Sbjct: 169 PAPGVYMPPPGMPGAYPPP 187
>Z73102-1|CAA97419.1| 298|Caenorhabditis elegans Hypothetical
protein B0035.1a protein.
Length = 298
Score = 30.7 bits (66), Expect = 1.6
Identities = 19/79 (24%), Positives = 22/79 (27%)
Frame = +2
Query: 707 PPXXXXKXXPAXFPXEXLPSXPSPXXRPXPXXGXXXXPPSSPXGXTXXAFXXTPPXFXAX 886
PP P FP +P PS P G P P +
Sbjct: 109 PPMPTPMPFPQHFPFPGMPPMPSGPPPPSMAYGMPPMPSGMMPPRGMPGAYPPPRGYPPA 168
Query: 887 PXSGVXPXPPXPGXXFPTP 943
P GV PP +P P
Sbjct: 169 PAPGVYMPPPGMPGAYPPP 187
>Z54238-1|CAA90992.2| 281|Caenorhabditis elegans Hypothetical
protein T28C6.1 protein.
Length = 281
Score = 29.9 bits (64), Expect = 2.8
Identities = 19/58 (32%), Positives = 22/58 (37%), Gaps = 1/58 (1%)
Frame = -1
Query: 830 GRXGGTXXSRXXXG-AGXRGRXXRGGXXGGKXPGXLX*XWXGXXPPXTWGARFFWGSS 660
GR GG+ R G AG G G GG+ G W G G+ WG S
Sbjct: 66 GRGGGSGGGRGGSGGAGAGGSGSGSGGWGGQDGGSSAGGWGGSQGGSQGGSSGGWGGS 123
>AF000198-7|AAB53052.1| 418|Caenorhabditis elegans Collagen protein
50 protein.
Length = 418
Score = 29.9 bits (64), Expect = 2.8
Identities = 24/102 (23%), Positives = 28/102 (27%)
Frame = +2
Query: 611 PXRAPXXGXXPLXPSPXXSPKKXGRPKSXVGXPPXXXXKXXPAXFPXEXLPSXPSPXXRP 790
P P P P P P G + PP PA E + PSP P
Sbjct: 205 PAGPPGPDGQPGAPGPDGQPGAGGTTSTNQPGPPGPAGPPGPAGPAGEDAYAQPSPAGTP 264
Query: 791 XPXXGXXXXPPSSPXGXTXXAFXXTPPXFXAXPXSGVXPXPP 916
P + P G P P + P PP
Sbjct: 265 GPPGPPGKDGEAGPDGPAGAPGTDGAP----GPDAAYCPCPP 302
>U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical
protein C01G8.9a protein.
Length = 1724
Score = 29.5 bits (63), Expect = 3.7
Identities = 24/99 (24%), Positives = 27/99 (27%)
Frame = +2
Query: 650 PSPXXSPKKXGRPKSXVGXPPXXXXKXXPAXFPXEXLPSXPSPXXRPXPXXGXXXXPPSS 829
P S P PP + P + P P P P P G P
Sbjct: 681 PGEPTSSTPSDTPAPSTSVPPPTSVQPPQPQQPPQGPPGPPGPQQHPGPYPG---YPGYG 737
Query: 830 PXGXTXXAFXXTPPXFXAXPXSGVXPXPPXPGXXFPTPP 946
P G PP P G P P P P+ P
Sbjct: 738 PPGAMRPPAGFAPP--PGAPY-GYPPGAPPPAGFHPSHP 773
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 29.5 bits (63), Expect = 3.7
Identities = 18/56 (32%), Positives = 20/56 (35%)
Frame = +1
Query: 655 PXXEPQKXRAPQVXGGXXPXQXXXRXPGXFPPXXPPLXXLPLXPAPXXXRXXXVPP 822
P P+K RA G P R P PP PP P+ P R PP
Sbjct: 124 PPPPPRKSRA---GGSSPPPPPPPRVPRTPPPRSPPPRRPPMTPPSPQRRPPRTPP 176
Score = 28.7 bits (61), Expect = 6.4
Identities = 26/99 (26%), Positives = 29/99 (29%)
Frame = +2
Query: 620 APXXGXXPLXPSPXXSPKKXGRPKSXVGXPPXXXXKXXPAXFPXEXLPSXPSPXXRPXPX 799
AP G P P P+K S PP P P P P P P
Sbjct: 112 APQHGDHEASPPPPPPPRKSRAGGSSPPPPP-------PPRVPRTPPPRSPPPRRPPMTP 164
Query: 800 XGXXXXPPSSPXGXTXXAFXXTPPXFXAXPXSGVXPXPP 916
PP +P TPP S + P PP
Sbjct: 165 PSPQRRPPRTPPSPEPRNPPRTPP-------SPIPPPPP 196
>U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 7 protein.
Length = 401
Score = 29.1 bits (62), Expect = 4.9
Identities = 26/104 (25%), Positives = 34/104 (32%)
Frame = +2
Query: 611 PXRAPXXGXXPLXPSPXXSPKKXGRPKSXVGXPPXXXXKXXPAXFPXEXLPSXPSPXXRP 790
P AP P P +P P++ V P PA +P +P+ P+P P
Sbjct: 63 PAPAPPPAPYPQHAVPAPAPPLASYPQNAVPVP-----APPPAPYPQHAVPA-PAPPPAP 116
Query: 791 XPXXGXXXXPPSSPXGXTXXAFXXTPPXFXAXPXSGVXPXPPXP 922
P P +P PP P P PP P
Sbjct: 117 YPQHA---VPAPAPYQQQPP--PPPPPPHYPPPPPHYPPPPPAP 155
>AF039052-9|AAF98625.1| 302|Caenorhabditis elegans Hypothetical
protein T22D1.2 protein.
Length = 302
Score = 29.1 bits (62), Expect = 4.9
Identities = 28/112 (25%), Positives = 34/112 (30%), Gaps = 4/112 (3%)
Frame = +2
Query: 623 PXXGXXPLXPSPXXSPKKX-GRPKSXVGXPPXXXXKXXPAXFPX---EXLPSXPSPXXRP 790
P G P P P+ G + PP P P + L + + RP
Sbjct: 130 PPKGTGSPPPPPTGEPQDLSGEGNASRRPPPPPKGTGSPPPPPTGEPQDLSTEGNASRRP 189
Query: 791 XPXXGXXXXPPSSPXGXTXXAFXXTPPXFXAXPXSGVXPXPPXPGXXFPTPP 946
P PP P G P A + P PP G PTPP
Sbjct: 190 PPPPKGTGTPPPPPTGE--------PQDLSAEGYASRRPPPPPKGTGSPTPP 233
>Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical
protein W01B6.7 protein.
Length = 301
Score = 28.7 bits (61), Expect = 6.4
Identities = 21/68 (30%), Positives = 22/68 (32%), Gaps = 2/68 (2%)
Frame = +2
Query: 641 PLXPSPXXSPKKXGRP-KSXVGXPPXXXXKXXPAXF-PXEXLPSXPSPXXRPXPXXGXXX 814
P P P SP K G+P K P K A P P P P P P
Sbjct: 104 PGPPGPGGSPGKPGKPGKPGAPGAPGNPGKGASAPCEPVTQPPCQPCPGGPPGPAGPAGP 163
Query: 815 XPPSSPXG 838
P P G
Sbjct: 164 PGPPGPDG 171
>V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-2 coding for a collagen.
).
Length = 301
Score = 28.7 bits (61), Expect = 6.4
Identities = 21/68 (30%), Positives = 22/68 (32%), Gaps = 2/68 (2%)
Frame = +2
Query: 641 PLXPSPXXSPKKXGRP-KSXVGXPPXXXXKXXPAXF-PXEXLPSXPSPXXRPXPXXGXXX 814
P P P SP K G+P K P K A P P P P P P
Sbjct: 104 PGPPGPGGSPGKPGKPGKPGAPGAPGNPGKGASAPCEPVTQPPCQPCPGGPPGPAGPAGP 163
Query: 815 XPPSSPXG 838
P P G
Sbjct: 164 PGPPGPDG 171
>M80650-1|AAA27985.1| 298|Caenorhabditis elegans alpha-collagen
protein.
Length = 298
Score = 28.7 bits (61), Expect = 6.4
Identities = 23/94 (24%), Positives = 27/94 (28%)
Frame = +2
Query: 641 PLXPSPXXSPKKXGRPKSXVGXPPXXXXKXXPAXFPXEXLPSXPSPXXRPXPXXGXXXXP 820
P P P +P K GRP G P P P + P +P P
Sbjct: 102 PGPPGPAGTPGKPGRP----GKPGAPGLPGNPGRPPQQPCEPITPPPWKPCPQGPPGPPG 157
Query: 821 PSSPXGXTXXAFXXTPPXFXAXPXSGVXPXPPXP 922
P P G + P A P P P
Sbjct: 158 PPGPPGDSGEPGSPGLPGQDAAPGEPGPKGPKGP 191
>J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 2 (col-2) gene, complete
cds. ).
Length = 301
Score = 28.7 bits (61), Expect = 6.4
Identities = 21/68 (30%), Positives = 22/68 (32%), Gaps = 2/68 (2%)
Frame = +2
Query: 641 PLXPSPXXSPKKXGRP-KSXVGXPPXXXXKXXPAXF-PXEXLPSXPSPXXRPXPXXGXXX 814
P P P SP K G+P K P K A P P P P P P
Sbjct: 104 PGPPGPGGSPGKPGKPGKPGAPGAPGNPGKGASAPCEPVTQPPCQPCPGGPPGPAGPAGP 163
Query: 815 XPPSSPXG 838
P P G
Sbjct: 164 PGPPGPDG 171
>AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen
structural gene, probabledorsal and ventral cuticle
component, from embryo to adult,but maximal in dauer
(28.0 kD) (col-2) protein.
Length = 301
Score = 28.7 bits (61), Expect = 6.4
Identities = 21/68 (30%), Positives = 22/68 (32%), Gaps = 2/68 (2%)
Frame = +2
Query: 641 PLXPSPXXSPKKXGRP-KSXVGXPPXXXXKXXPAXF-PXEXLPSXPSPXXRPXPXXGXXX 814
P P P SP K G+P K P K A P P P P P P
Sbjct: 104 PGPPGPGGSPGKPGKPGKPGAPGAPGNPGKGASAPCEPVTQPPCQPCPGGPPGPAGPAGP 163
Query: 815 XPPSSPXG 838
P P G
Sbjct: 164 PGPPGPDG 171
>U53155-5|AAC48270.1| 303|Caenorhabditis elegans Collagen protein
43 protein.
Length = 303
Score = 28.3 bits (60), Expect = 8.5
Identities = 27/116 (23%), Positives = 31/116 (26%), Gaps = 4/116 (3%)
Frame = +2
Query: 611 PXRAPXXGXXPLXPSPXXS-PKKXGRPKSXVGXPPXXXXKXXPAXFPXEXLPSXPSPXXR 787
P + P P P P P+ P G P P + P P P
Sbjct: 133 PGKPPTAPCEPTTPPPCKPCPQGPPGPPGPPGAPGDPGEAGTPGRPGTDATPGLPGPRGP 192
Query: 788 PXPXXGXXXXPPSSPXGXTXXAFXXTP--PXFXAXPXSGVXPXPP-XPGXXFPTPP 946
P P P G + TP P P PP PG P P
Sbjct: 193 PGPPGEAGQPGPQGDAGTPAQSEPLTPGAPGEAGDAGPAGPPGPPGAPGNDGPPGP 248
>AB072926-1|BAB69889.1| 303|Caenorhabditis elegans collagen
protein.
Length = 303
Score = 28.3 bits (60), Expect = 8.5
Identities = 27/116 (23%), Positives = 31/116 (26%), Gaps = 4/116 (3%)
Frame = +2
Query: 611 PXRAPXXGXXPLXPSPXXS-PKKXGRPKSXVGXPPXXXXKXXPAXFPXEXLPSXPSPXXR 787
P + P P P P P+ P G P P + P P P
Sbjct: 133 PGKPPTAPCEPTTPPPCKPCPQGPPGPPGPPGAPGDPGEAGTPGRPGTDATPGLPGPRGP 192
Query: 788 PXPXXGXXXXPPSSPXGXTXXAFXXTP--PXFXAXPXSGVXPXPP-XPGXXFPTPP 946
P P P G + TP P P PP PG P P
Sbjct: 193 PGPPGEAGQPGPQGDAGTPAQSEPLTPGAPGEAGDAGPAGPPGPPGAPGNDGPPGP 248
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,147,105
Number of Sequences: 27780
Number of extensions: 148204
Number of successful extensions: 670
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 287
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 479
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2454664212
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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