Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_H24
         (1026 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   0.80 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   3.2  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    26   7.5  
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    26   9.9  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.5 bits (63), Expect = 0.80
 Identities = 25/90 (27%), Positives = 25/90 (27%), Gaps = 6/90 (6%)
 Frame = +1

Query: 442 PPPPXGGXAVFXFXGPPXPVXSPPXXSXXPPXXXGXGGXXXXPXPP---RGXXXPXFPPX 612
           P PP G  A      PP P  S P     PP           P PP    G   P  PP 
Sbjct: 352 PLPPQGRSAP-----PPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPL 406

Query: 613 XXG---GXPPGXKTXFXPXRGPXKRXPKTP 693
                   PP       P   P    P  P
Sbjct: 407 GNASRTSTPPVPTPPSLPPSAPPSLPPSAP 436



 Score = 29.5 bits (63), Expect = 0.80
 Identities = 13/41 (31%), Positives = 16/41 (39%)
 Frame = -2

Query: 665 PLXGQKXVFXPGGXPPXFXGGKXGXXXPLGGXGKXXSPPXP 543
           PL   + V  P   PP   G       PLG   +  +PP P
Sbjct: 378 PLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVP 418


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 11/31 (35%), Positives = 12/31 (38%)
 Frame = +1

Query: 487 PPXPVXSPPXXSXXPPXXXGXGGXXXXPXPP 579
           PP P+   P     PP   G G     P PP
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 27.1 bits (57), Expect = 4.3
 Identities = 12/31 (38%), Positives = 12/31 (38%)
 Frame = -1

Query: 636 PXGXPPXXXGGEXRXXPPPWGXGXXXXPPPP 544
           P   P    GG     PPP   G    PPPP
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780



 Score = 26.6 bits (56), Expect = 5.7
 Identities = 16/48 (33%), Positives = 17/48 (35%), Gaps = 1/48 (2%)
 Frame = +1

Query: 439 NPPPPXGGXAVFXFXGPPXPVXSP-PXXSXXPPXXXGXGGXXXXPXPP 579
           +PPPP     V      P PV  P P     PP     G     P PP
Sbjct: 731 SPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPP 778


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 29/82 (35%), Positives = 29/82 (35%), Gaps = 6/82 (7%)
 Frame = -2

Query: 710 PGPX-FXGVXGXLFXGPLXGQKXVFXPG-----GXPPXFXGGKXGXXXPLGGXGKXXSPP 549
           PGP  F G  G    G   G    F  G     G P  F GG  G    LGG G      
Sbjct: 202 PGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFG------ 255

Query: 548 XPXXXGGXXXFXGGEXTGXGGP 483
                GG   F GG   G GGP
Sbjct: 256 -----GGPGGFGGGPG-GHGGP 271


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 21/90 (23%), Positives = 23/90 (25%)
 Frame = +1

Query: 442 PPPPXGGXAVFXFXGPPXPVXSPPXXSXXPPXXXGXGGXXXXPXPPRGXXXPXFPPXXXG 621
           PPPP           PP P+   P     PP      G    P P         PP    
Sbjct: 234 PPPPMHHEPGEHM--PPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMH 291

Query: 622 GXPPGXKTXFXPXRGPXKRXPKTPXKXGPG 711
             P            P +  P  P    PG
Sbjct: 292 HEPGEHMPPPPMHHEPGEHMPPPPMHHEPG 321


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,184,476
Number of Sequences: 5004
Number of extensions: 27357
Number of successful extensions: 74
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 535245848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)