Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_H21
         (887 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50135-6|AAN63429.1|  925|Caenorhabditis elegans Hypothetical pr...    28   7.8  
U29096-1|AAA68406.1|  105|Caenorhabditis elegans Neuropeptide-li...    23   8.1  

>U50135-6|AAN63429.1|  925|Caenorhabditis elegans Hypothetical
           protein C52E12.1 protein.
          Length = 925

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 18/67 (26%), Positives = 30/67 (44%)
 Frame = +1

Query: 442 LFGSELSPALREEQPXPPLGC*STVNS*PALKFRLVGRIQHPASSALPXMVPHSVTLGEG 621
           +F S  S     +Q  P L   +   +  + +F  + +   PA+ A P +V H  +LG+ 
Sbjct: 410 VFTSTRSAYTSNQQEFPSLAPQAPPPNVRSSEFPRLNKANKPAAPAAPAVVDHFPSLGDS 469

Query: 622 RSHSGPP 642
            S S  P
Sbjct: 470 SSSSSAP 476


>U29096-1|AAA68406.1|  105|Caenorhabditis elegans Neuropeptide-like
           protein protein32 protein.
          Length = 105

 Score = 23.4 bits (48), Expect(2) = 8.1
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +1

Query: 286 VHRFMGWGRGGEWG 327
           V R+ GWG  G WG
Sbjct: 52  VKRYGGWGGRGGWG 65



 Score = 23.4 bits (48), Expect(2) = 8.1
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +1

Query: 301 GWGRGGEWGY 330
           GWGRGG  GY
Sbjct: 63  GWGRGGGRGY 72


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,246,502
Number of Sequences: 27780
Number of extensions: 385595
Number of successful extensions: 798
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 798
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2244863852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)