Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_H21
         (887 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   3.7  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   6.5  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   8.6  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   8.6  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -3

Query: 327  APFPSPSPPHKSMDHNGNFN 268
            +P P P PP     +N +FN
Sbjct: 1856 SPEPPPPPPRNHDQNNSSFN 1875


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -3

Query: 300 HKSMDHNGNFNLIS 259
           H S DHNGN++ ++
Sbjct: 674 HLSPDHNGNYSCVA 687


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +2

Query: 560 SIQPHLLYLXWY 595
           S+ P +LYL WY
Sbjct: 803 SVIPRILYLTWY 814


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = +3

Query: 546 GWSHSASSLICSTSYGTXLCHTGRGPVS 629
           GW    SS++C   Y   +  T  G +S
Sbjct: 532 GWLCGLSSMLCIPGYMIYIWFTTSGTIS 559


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = +3

Query: 546 GWSHSASSLICSTSYGTXLCHTGRGPVS 629
           GW    SS++C   Y   +  T  G +S
Sbjct: 585 GWLCGLSSMLCIPGYMIYIWFTTSGTIS 612


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 230,265
Number of Sequences: 438
Number of extensions: 5820
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28662543
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)