Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP10_F_H20
(878 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC20F10.06 |mad2||spindle checkpoint protein Mad2|Schizosaccha... 124 2e-29
SPAC12D12.09 |rev7||DNA polymerase zeta Rev7 |Schizosaccharomyce... 37 0.003
SPCC285.09c |cgs2|pde1|cAMP-specific phosphodiesterase Cgs2|Schi... 27 2.7
SPAC2C4.09 |||DUF1640 family protein|Schizosaccharomyces pombe|c... 27 2.7
SPAC23H4.09 |cdb4||curved DNA-binding protein Cdb4|Schizosacchar... 27 4.7
SPAC23H3.04 |||conserved fungal protein|Schizosaccharomyces pomb... 26 6.1
SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces p... 26 6.1
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch... 26 8.1
>SPBC20F10.06 |mad2||spindle checkpoint protein
Mad2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 203
Score = 124 bits (299), Expect = 2e-29
Identities = 54/162 (33%), Positives = 109/162 (67%), Gaps = 1/162 (0%)
Frame = +1
Query: 172 MSLQQTKNCITLRGSAQIICEYLKFSINSVLFQRGLYPPETFKAENQYGITLLLSEDPQI 351
MS + +L+GS++++ E+ ++++NS+LFQRG+YP E FK +YG+ +L+S D ++
Sbjct: 1 MSSVPIRTNFSLKGSSKLVSEFFEYAVNSILFQRGIYPAEDFKVVRKYGLNMLVSVDEEV 60
Query: 352 KSFLTNLLTQSEEWILDKKVKKLSLIILNVANKEVLECWDFNIQYEDGDTALSKEKNEMV 531
K+++ +++Q +W+ KK++KL L+I + + E LE W FN++ D + ++ + +
Sbjct: 61 KTYIRKIVSQLHKWMFAKKIQKLILVITSKCSGEDLERWQFNVEMVD-----TADQFQNI 115
Query: 532 GSK-DLKKIHREIRDVMLQVAATISYLPLLDCRCXFDVXXHA 654
G+K D ++ +EI+ ++ Q+ AT+++LP L+ +C F+V +A
Sbjct: 116 GNKEDELRVQKEIQALIRQITATVTFLPQLEEQCTFNVLVYA 157
>SPAC12D12.09 |rev7||DNA polymerase zeta Rev7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 213
Score = 37.1 bits (82), Expect = 0.003
Identities = 20/77 (25%), Positives = 38/77 (49%)
Frame = +1
Query: 223 IICEYLKFSINSVLFQRGLYPPETFKAENQYGITLLLSEDPQIKSFLTNLLTQSEEWILD 402
I E+L SI+ +L+ R LYP + F +Y + S P + ++ ++ E +
Sbjct: 15 IFGEFLLVSIHCILYARRLYPQDLFIKARKYNTIVWQSRHPILCEYIEEVVQSCIEELQT 74
Query: 403 KKVKKLSLIILNVANKE 453
V +++L I+N +E
Sbjct: 75 GSVHQVALSIINKEQRE 91
>SPCC285.09c |cgs2|pde1|cAMP-specific phosphodiesterase
Cgs2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 346
Score = 27.5 bits (58), Expect = 2.7
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = -2
Query: 493 HLRIEC*SPNIPELLC*PHLV*SEIVFSLSCQESILHS 380
H+ IEC +P+IP+ L H +V L +S++ S
Sbjct: 252 HILIECSTPDIPDTLLFGHFCPRHLVNELCILQSLVQS 289
>SPAC2C4.09 |||DUF1640 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 216
Score = 27.5 bits (58), Expect = 2.7
Identities = 28/112 (25%), Positives = 48/112 (42%), Gaps = 2/112 (1%)
Frame = +1
Query: 235 YLKFSINSVLFQ-RGLYPPETFKAENQYGITLLLSEDPQIKSFLTNLLTQSEEWILDKKV 411
YLK NS+ Q + L+ T G+ + S L + E I DKK
Sbjct: 2 YLKIPCNSIYHQFQPLFRARTVHKVRSLGLNGFYRKYHGFNS-LRFVRVLQEAGIDDKKS 60
Query: 412 KKLSLIILNVANKEVLECWDFNIQYEDGDTALSKEKNEMVGSK-DLKKIHRE 564
+ L +I NV + + DF++ E D + ++K + + +L+ I R+
Sbjct: 61 ETLMRLISNVYSDMHEKISDFSVTKEQQDRVMYQQKVDFAHLRSELQSIERQ 112
>SPAC23H4.09 |cdb4||curved DNA-binding protein
Cdb4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 381
Score = 26.6 bits (56), Expect = 4.7
Identities = 17/80 (21%), Positives = 37/80 (46%)
Frame = +1
Query: 142 SNIIDKQLTTMSLQQTKNCITLRGSAQIICEYLKFSINSVLFQRGLYPPETFKAENQYGI 321
++I+DK T+ + ++ + ++I + +N QR TF+ YG+
Sbjct: 169 TDIVDKIATSYGCKPVAGMLSHQQEREVIDGKKQVILNPSDSQRSEMDTFTFEEGEVYGV 228
Query: 322 TLLLSEDPQIKSFLTNLLTQ 381
+L+S P K +++ T+
Sbjct: 229 DILVSTSPSGKVKRSDIATR 248
>SPAC23H3.04 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 300
Score = 26.2 bits (55), Expect = 6.1
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = -1
Query: 563 SRCIFFKSLLPTISFFSLDKAVS 495
SRC F LP S F DKA+S
Sbjct: 25 SRCKLFLKTLPKTSIFFFDKALS 47
>SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1033
Score = 26.2 bits (55), Expect = 6.1
Identities = 16/61 (26%), Positives = 28/61 (45%)
Frame = -1
Query: 464 HSRTSLLATFSMIRDSFFTFLSRIHSSLCVRRFVKKLLI*GSSESSSVMPYWFSALKVSG 285
H SL ++M D + + HS + R + +L G+ E+ V+ + L +SG
Sbjct: 153 HKLNSLKQLYTMSMDIHSRYRTEAHSDVTARFNERFILSLGNCENCLVIDDELNVLPISG 212
Query: 284 G 282
G
Sbjct: 213 G 213
>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1327
Score = 25.8 bits (54), Expect = 8.1
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +1
Query: 331 LSEDPQIKSFLTNLLTQSEEWILDKKVKKLSLIILNVANKEVLEC 465
LSE Q+ T LT + +W + + LS +I + V++C
Sbjct: 1129 LSEAAQLLELTTKKLTGNFDWYSTENLTVLSTLIAAALSPNVVKC 1173
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,807,701
Number of Sequences: 5004
Number of extensions: 55003
Number of successful extensions: 147
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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