Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_H18
         (876 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0067 + 25557975-25558553                                         31   1.2  
05_03_0428 + 13899295-13899669                                         29   3.7  
04_04_1016 - 30139691-30139951,30140066-30140134,30141267-301414...    29   3.7  
04_04_1009 - 30078988-30079248,30079363-30079431,30080564-300807...    29   3.7  
05_05_0106 + 22435192-22435614,22436880-22436968,22437617-224378...    29   6.5  
06_03_0853 - 25384198-25384731,25384810-25385210,25385816-25386011     28   8.5  

>02_05_0067 + 25557975-25558553
          Length = 192

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 19/43 (44%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +3

Query: 363 CSPRCTARGRGGSRKHWCWRTCARRGSAPATACAP-WTGSTRA 488
           C+P  T R    SR H C   C    S P  AC+P  TGST+A
Sbjct: 40  CNPSGTLRP---SRSHSCQDCCKAGRSYPTYACSPATTGSTKA 79


>05_03_0428 + 13899295-13899669
          Length = 124

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 393 GGSRKHWCWRTCARRGSAPATAC 461
           GGSR+HW   T +R   +PA  C
Sbjct: 78  GGSRRHWTCSTSSRSCRSPAPVC 100


>04_04_1016 -
           30139691-30139951,30140066-30140134,30141267-30141470,
           30141552-30141808,30141899-30141983,30142080-30142164,
           30142269-30142795
          Length = 495

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +3

Query: 441 SAPATACAPWTGSTRAPRXSSWR 509
           S+ +++ +PWTGS+ A   +SWR
Sbjct: 435 SSSSSSASPWTGSSAAATAASWR 457


>04_04_1009 -
           30078988-30079248,30079363-30079431,30080564-30080767,
           30080849-30081105,30081196-30081280,30081377-30081461,
           30081566-30082092
          Length = 495

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +3

Query: 441 SAPATACAPWTGSTRAPRXSSWR 509
           S+ +++ +PWTGS+ A   +SWR
Sbjct: 435 SSSSSSASPWTGSSAAATAASWR 457


>05_05_0106 +
           22435192-22435614,22436880-22436968,22437617-22437814,
           22438475-22438679,22438749-22438916,22439095-22439262,
           22439344-22439534,22440776-22440879,22441285-22441298
          Length = 519

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 16/31 (51%), Positives = 19/31 (61%)
 Frame = +3

Query: 384 RGRGGSRKHWCWRTCARRGSAPATACAPWTG 476
           RG GGS +    RT  + GSA A+A A WTG
Sbjct: 33  RGGGGSGR----RTPGKGGSASASAAAGWTG 59


>06_03_0853 - 25384198-25384731,25384810-25385210,25385816-25386011
          Length = 376

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +2

Query: 296 EELSKLYRALEEERGVAEPERFVFPALYGARSRRLEEALVL 418
           EE  K   AL+EER   E E+F F      ++ ++EE  +L
Sbjct: 328 EERCKRAFALQEERNKLEREKFEFQKKEAEKAEKVEEERIL 368


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,969,860
Number of Sequences: 37544
Number of extensions: 196581
Number of successful extensions: 776
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 776
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)