Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_H18
         (876 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    25   0.92 
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   3.7  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    23   3.7  

>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 25.0 bits (52), Expect = 0.92
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +2

Query: 131 PLSSGGANYTSLLYRARLQAPGRPDLRLF 217
           PLSS G    + ++ + L  P  PD+++F
Sbjct: 394 PLSSTGLAQVTGIWHSNLTTPDDPDIQIF 422


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +2

Query: 80  LRDVMLRLHYCAVAELQPLSSGGAN 154
           L D + RL+Y A   L     GGAN
Sbjct: 125 LNDYINRLNYSAFVNLTAYYDGGAN 149


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +2

Query: 449 RDRLRPVDWEYACAAMXQ 502
           RD  +P+D EY+  A  Q
Sbjct: 512 RDNTKPIDMEYSSVAQQQ 529


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,880
Number of Sequences: 438
Number of extensions: 1880
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28402218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)