Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_H16
         (891 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_1201 - 11419851-11419913,11420090-11420311                       32   0.53 
01_01_1008 - 7987936-7988628,7988923-7989102                           31   0.93 
10_01_0038 + 437738-438122,439215-439501,440111-440375,440687-44...    31   1.6  
12_02_1188 + 26801833-26802225                                         29   6.6  
06_01_0438 + 3110703-3111945,3112486-3113057                           29   6.6  
03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343     29   6.6  
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095...    28   8.7  

>07_01_1201 - 11419851-11419913,11420090-11420311
          Length = 94

 Score = 32.3 bits (70), Expect = 0.53
 Identities = 23/61 (37%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
 Frame = +2

Query: 539 LRPPDEHHKNRRSSQRWRN--PTGL*RYQAFPPGKLPRALSCSDPAAYRIPVR-LSPXRE 709
           L PP          Q+WR+  PTG   + +FP G LP A     PA  R P   L P R 
Sbjct: 13  LLPPPPPLPALPQGQQWRSTGPTGKLCFCSFPAGALPPAAGAGQPAPDRQPATPLFPSRV 72

Query: 710 A 712
           A
Sbjct: 73  A 73


>01_01_1008 - 7987936-7988628,7988923-7989102
          Length = 290

 Score = 31.5 bits (68), Expect = 0.93
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = -2

Query: 692 GGQVSGKRQGRNRRAHEGAFQGETPG 615
           GG+V+G+   R+RR   GA++GE  G
Sbjct: 249 GGEVNGEEAARSRRRRRGAWEGEEEG 274


>10_01_0038 +
           437738-438122,439215-439501,440111-440375,440687-440784
          Length = 344

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 28/88 (31%), Positives = 36/88 (40%)
 Frame = -2

Query: 653 RAHEGAFQGETPGIFIVLSGFATSDLSVDFCDARQGGGAYGKTPATRPFYGSWPFAGLLL 474
           R H+  F G   G    L G +   LS      R GGG     P+TR   G     G + 
Sbjct: 213 RGHDTVFDGVYVGRRWRLGGGSDGVLSSARSGGRGGGGDDSALPSTRS-GGKGDSGGSVA 271

Query: 473 TCSFLRYPLILWITVLPPLSELIPLAAA 390
           T S  R  +     + PPLS LI +A +
Sbjct: 272 TASPHRLQMAGNPRLSPPLSPLISIAGS 299


>12_02_1188 + 26801833-26802225
          Length = 130

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -2

Query: 692 GGQVSGKRQGRNRRAHEGAFQGETPGIFIVLSG 594
           GG  SGKR      AHEG  +G  P +++V  G
Sbjct: 33  GGGSSGKRSSSAAAAHEGVPEGHVP-VYVVGEG 64


>06_01_0438 + 3110703-3111945,3112486-3113057
          Length = 604

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = -3

Query: 154 HCILVVVCPNSSMYLIMSGSN*PSXKGRSAAAVP 53
           HC + +VC +S+  L++S    P+    ++AA+P
Sbjct: 64  HCFVEIVCADSAGRLLLSAKPRPAPAATTSAALP 97


>03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343
          Length = 356

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 22/56 (39%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
 Frame = +3

Query: 351 PLPRSLTRCARSF--GCGERYQLTQRR*YGYPQNQGITQ--ERTCEQKASKRPGTV 506
           P PRS  RC      GCG R Q TQR     P N  IT   E TC   ++  P  +
Sbjct: 150 PYPRSYYRCTHKLDQGCGARRQ-TQRC-EADPSNYDITYYGEHTCRDPSTIIPTAI 203


>10_08_0940 -
           21708557-21708733,21709058-21709142,21709330-21709551,
           21710640-21710815,21711883-21711946,21712433-21712507,
           21715114-21715199,21715297-21716715
          Length = 767

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = +3

Query: 300 NESAN---ARGEAVCVLGALPLPRSLTRCAR 383
           +ESAN   AR EAV  +G +P+   L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,746,545
Number of Sequences: 37544
Number of extensions: 459022
Number of successful extensions: 1146
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1146
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)