Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_H15
         (960 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    32   0.10 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    30   0.56 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   3.0  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    24   6.1  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 32.3 bits (70), Expect = 0.10
 Identities = 14/35 (40%), Positives = 16/35 (45%), Gaps = 4/35 (11%)
 Frame = -3

Query: 709 GXXPPPPPPP----XXXXPPPPXXXXXGXGGXXFF 617
           G  PPPPPPP        PPPP       GG  ++
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYY 793



 Score = 28.7 bits (61), Expect = 1.3
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = -2

Query: 710 GXXPPPPPPXXXXXXPPP 657
           G  PPPPPP      PPP
Sbjct: 760 GPPPPPPPPGVAGAGPPP 777



 Score = 26.6 bits (56), Expect = 5.2
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -3

Query: 700 PPPPPPPXXXXPPPP 656
           P PPP P    PPPP
Sbjct: 750 PVPPPAPIMGGPPPP 764


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 29.9 bits (64), Expect = 0.56
 Identities = 12/20 (60%), Positives = 12/20 (60%), Gaps = 2/20 (10%)
 Frame = -3

Query: 709 GXXPPPPPPPXXXXP--PPP 656
           G  PPPPPPP    P  PPP
Sbjct: 7   GNPPPPPPPPGFEPPSQPPP 26


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = -3

Query: 700  PPPPPPPXXXXPPP 659
            P PPPPP    PPP
Sbjct: 1705 PTPPPPPMSVPPPP 1718



 Score = 27.5 bits (58), Expect = 3.0
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = -3

Query: 697  PPPPPPXXXXPPPP 656
            P PPPP    PPPP
Sbjct: 1705 PTPPPPPMSVPPPP 1718


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 23.8 bits (49), Expect(2) = 6.1
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -3

Query: 700 PPPPPPP 680
           PPPPPPP
Sbjct: 191 PPPPPPP 197



 Score = 20.6 bits (41), Expect(2) = 6.1
 Identities = 7/13 (53%), Positives = 7/13 (53%)
 Frame = -3

Query: 697 PPPPPPXXXXPPP 659
           P PPPP     PP
Sbjct: 236 PAPPPPPPPTLPP 248


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,712,638
Number of Sequences: 5004
Number of extensions: 20272
Number of successful extensions: 203
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 491307756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)