Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP10_F_H14
(888 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z19152-8|CAA79543.2| 89|Caenorhabditis elegans Hypothetical pr... 108 6e-24
AF303272-1|AAG50230.1| 89|Caenorhabditis elegans barrier-to-au... 108 6e-24
AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical... 36 0.039
AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein p... 36 0.039
Z77662-14|CAI79239.1| 245|Caenorhabditis elegans Hypothetical p... 35 0.089
Z77662-15|CAI79240.1| 255|Caenorhabditis elegans Hypothetical p... 33 0.36
U00058-3|AAD31933.1| 162|Caenorhabditis elegans Ground-like (gr... 33 0.36
AC024809-7|AAF59540.1| 315|Caenorhabditis elegans Hypothetical ... 33 0.36
AF067219-3|AAC17027.1| 74|Caenorhabditis elegans Hypothetical ... 32 0.63
Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical pr... 31 0.83
AF068713-14|AAK73895.1| 172|Caenorhabditis elegans Ground-like ... 31 1.1
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 31 1.5
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 31 1.5
Z70312-3|CAA94385.1| 172|Caenorhabditis elegans Hypothetical pr... 30 1.9
AL132860-21|CAB60518.2| 759|Caenorhabditis elegans Hypothetical... 30 1.9
AF057032-1|AAC13567.1| 759|Caenorhabditis elegans DNA topoisome... 30 1.9
Z77662-5|CAB01192.2| 579|Caenorhabditis elegans Hypothetical pr... 30 2.5
Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical pr... 29 3.4
Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical pr... 29 3.4
U64857-7|AAC25861.2| 373|Caenorhabditis elegans Groundhog (hedg... 29 3.4
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 29 3.4
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 29 3.4
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 29 3.4
AF016446-2|AAC24165.1| 70|Caenorhabditis elegans Hypothetical ... 29 3.4
DQ178246-1|ABA18185.1| 482|Caenorhabditis elegans TPX2-related ... 29 5.9
DQ178245-1|ABA18184.1| 507|Caenorhabditis elegans TPX2-related ... 29 5.9
AC025716-4|AAL32238.1| 482|Caenorhabditis elegans Tpx2 (targeti... 29 5.9
AC025716-2|AAK39617.1| 507|Caenorhabditis elegans Tpx2 (targeti... 29 5.9
U55366-3|AAY86188.1| 118|Caenorhabditis elegans Hypothetical pr... 28 7.8
D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like prot... 28 7.8
AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a... 28 7.8
AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a... 28 7.8
AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 28 7.8
AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a... 28 7.8
AC025721-11|AAK29900.1| 78|Caenorhabditis elegans Hypothetical... 28 7.8
>Z19152-8|CAA79543.2| 89|Caenorhabditis elegans Hypothetical
protein B0464.7 protein.
Length = 89
Score = 108 bits (259), Expect = 6e-24
Identities = 44/88 (50%), Positives = 61/88 (69%)
Frame = +3
Query: 156 STSQKHRNFVAEPMGEKPVTELAGVGEVLGKRLETGGFDKAYVVLGQFLVLKKDKELFQE 335
STS KHR FV EPMG+K VT +AG+G G +L GFDKAYV+ GQ+L+LKKD++LF E
Sbjct: 2 STSVKHREFVGEPMGDKEVTCIAGIGPTYGTKLTDAGFDKAYVLFGQYLLLKKDEDLFIE 61
Query: 336 WMKDACSANSKQSADCYQCLKDWCDEFL 419
W+K+ + + + CL +W D+F+
Sbjct: 62 WLKETAGVTANHAKTAFNCLNEWADQFM 89
>AF303272-1|AAG50230.1| 89|Caenorhabditis elegans
barrier-to-autointegration factor protein.
Length = 89
Score = 108 bits (259), Expect = 6e-24
Identities = 44/88 (50%), Positives = 61/88 (69%)
Frame = +3
Query: 156 STSQKHRNFVAEPMGEKPVTELAGVGEVLGKRLETGGFDKAYVVLGQFLVLKKDKELFQE 335
STS KHR FV EPMG+K VT +AG+G G +L GFDKAYV+ GQ+L+LKKD++LF E
Sbjct: 2 STSVKHREFVGEPMGDKEVTCIAGIGPTYGTKLTDAGFDKAYVLFGQYLLLKKDEDLFIE 61
Query: 336 WMKDACSANSKQSADCYQCLKDWCDEFL 419
W+K+ + + + CL +W D+F+
Sbjct: 62 WLKETAGVTANHAKTAFNCLNEWADQFM 89
>AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical
protein Y116A8C.32 protein.
Length = 699
Score = 35.9 bits (79), Expect = 0.039
Identities = 15/27 (55%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = +1
Query: 811 GGGGXFXXKXPPPGX-GXFXXPPPPPP 888
GGG PPPG G F PPPPPP
Sbjct: 654 GGGSSMPMPVPPPGGLGGFMPPPPPPP 680
Score = 34.3 bits (75), Expect = 0.12
Identities = 13/26 (50%), Positives = 13/26 (50%)
Frame = +3
Query: 810 GGGGGFXXKXPPPGXXXFXXPPPPPP 887
GGG PPPG PPPPPP
Sbjct: 654 GGGSSMPMPVPPPGGLGGFMPPPPPP 679
Score = 32.3 bits (70), Expect = 0.48
Identities = 13/29 (44%), Positives = 13/29 (44%)
Frame = -1
Query: 888 GGGGGGGXKXPXPRGGXFXXKXPPPPPXP 802
G GGG P P G PPPPP P
Sbjct: 652 GSGGGSSMPMPVPPPGGLGGFMPPPPPPP 680
Score = 29.9 bits (64), Expect = 2.5
Identities = 14/30 (46%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Frame = -1
Query: 888 GGGGGGGXKXPXPRG-GXFXXKXPPPPPXP 802
GGG P P G G F PPPPP P
Sbjct: 654 GGGSSMPMPVPPPGGLGGFMPPPPPPPPMP 683
>AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein
protein.
Length = 699
Score = 35.9 bits (79), Expect = 0.039
Identities = 15/27 (55%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = +1
Query: 811 GGGGXFXXKXPPPGX-GXFXXPPPPPP 888
GGG PPPG G F PPPPPP
Sbjct: 654 GGGSSMPMPVPPPGGLGGFMPPPPPPP 680
Score = 34.3 bits (75), Expect = 0.12
Identities = 13/26 (50%), Positives = 13/26 (50%)
Frame = +3
Query: 810 GGGGGFXXKXPPPGXXXFXXPPPPPP 887
GGG PPPG PPPPPP
Sbjct: 654 GGGSSMPMPVPPPGGLGGFMPPPPPP 679
Score = 32.3 bits (70), Expect = 0.48
Identities = 13/29 (44%), Positives = 13/29 (44%)
Frame = -1
Query: 888 GGGGGGGXKXPXPRGGXFXXKXPPPPPXP 802
G GGG P P G PPPPP P
Sbjct: 652 GSGGGSSMPMPVPPPGGLGGFMPPPPPPP 680
Score = 29.9 bits (64), Expect = 2.5
Identities = 14/30 (46%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Frame = -1
Query: 888 GGGGGGGXKXPXPRG-GXFXXKXPPPPPXP 802
GGG P P G G F PPPPP P
Sbjct: 654 GGGSSMPMPVPPPGGLGGFMPPPPPPPPMP 683
>Z77662-14|CAI79239.1| 245|Caenorhabditis elegans Hypothetical
protein F47B8.13 protein.
Length = 245
Score = 34.7 bits (76), Expect = 0.089
Identities = 14/27 (51%), Positives = 15/27 (55%)
Frame = -3
Query: 886 GGGGGGXKKXXSPGGGFXXKXPPPPPP 806
GGGGGG GG + PPPPPP
Sbjct: 17 GGGGGGGGGEAGYSGGAGVEAPPPPPP 43
Score = 31.5 bits (68), Expect = 0.83
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = -1
Query: 888 GGGGGGGXKXPXPRGGXFXXKXPPPPP 808
GGGGGGG G + PPPPP
Sbjct: 16 GGGGGGGGGGEAGYSGGAGVEAPPPPP 42
Score = 31.1 bits (67), Expect = 1.1
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = +3
Query: 807 GGGGGGFXXKXPPPGXXXFXXPPPPPP 887
GGGGGG + G PPPPPP
Sbjct: 17 GGGGGGGGGEAGYSGGAGVEAPPPPPP 43
Score = 28.7 bits (61), Expect = 5.9
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = +1
Query: 808 GGGGGXFXXKXPPPGXGXFXXPPPPPP 888
GGGGG + G PPPPPP
Sbjct: 17 GGGGGGGGGEAGYSGGAGVEAPPPPPP 43
>Z77662-15|CAI79240.1| 255|Caenorhabditis elegans Hypothetical
protein F47B8.14 protein.
Length = 255
Score = 32.7 bits (71), Expect = 0.36
Identities = 15/27 (55%), Positives = 15/27 (55%)
Frame = -3
Query: 886 GGGGGGXKKXXSPGGGFXXKXPPPPPP 806
GGGGGG GGG PPPPPP
Sbjct: 23 GGGGGGYS---GGGGGGGDAAPPPPPP 46
Score = 29.5 bits (63), Expect = 3.4
Identities = 13/29 (44%), Positives = 13/29 (44%)
Frame = -1
Query: 888 GGGGGGGXKXPXPRGGXFXXKXPPPPPXP 802
GGGGGGG P P P P P P
Sbjct: 31 GGGGGGGDAAPPPPPPADAAPAPAPAPEP 59
Score = 28.3 bits (60), Expect = 7.8
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = +3
Query: 807 GGGGGGFXXKXPPPGXXXFXXPPPPP 884
GGGGGG PPP P P P
Sbjct: 32 GGGGGGDAAPPPPPPADAAPAPAPAP 57
>U00058-3|AAD31933.1| 162|Caenorhabditis elegans Ground-like (grd
related) protein22 protein.
Length = 162
Score = 32.7 bits (71), Expect = 0.36
Identities = 17/39 (43%), Positives = 17/39 (43%), Gaps = 5/39 (12%)
Frame = +3
Query: 786 FFFXXXXGGGGGGFXXK-----XPPPGXXXFXXPPPPPP 887
F F GGGGGG PPP PPPPPP
Sbjct: 18 FLFPMAGGGGGGGGCAPAAPACAPPPPPMCGCAPPPPPP 56
Score = 31.5 bits (68), Expect = 0.83
Identities = 17/41 (41%), Positives = 17/41 (41%), Gaps = 7/41 (17%)
Frame = +1
Query: 787 FFFXXXXGGGGGX-------FXXKXPPPGXGXFXXPPPPPP 888
F F GGGGG PPP G PPPPPP
Sbjct: 18 FLFPMAGGGGGGGGCAPAAPACAPPPPPMCGCAPPPPPPPP 58
>AC024809-7|AAF59540.1| 315|Caenorhabditis elegans Hypothetical
protein Y53G8AR.9 protein.
Length = 315
Score = 32.7 bits (71), Expect = 0.36
Identities = 15/29 (51%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Frame = -3
Query: 886 GGGGGGXKKXXSPGG--GFXXKXPPPPPP 806
GGGGGG GG G + PPPPPP
Sbjct: 189 GGGGGGMGGGGGSGGSGGGSGRFPPPPPP 217
>AF067219-3|AAC17027.1| 74|Caenorhabditis elegans Hypothetical
protein R12E2.6 protein.
Length = 74
Score = 31.9 bits (69), Expect = 0.63
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +3
Query: 816 GGGFXXKXPPPGXXXFXXPPPPP 884
GGGF PP G + PPPPP
Sbjct: 44 GGGFGPPPPPFGPVGYALPPPPP 66
Score = 28.3 bits (60), Expect = 7.8
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = +1
Query: 817 GGXFXXKXPPPGXGXFXXPPPPP 885
GG F PP G + PPPPP
Sbjct: 44 GGGFGPPPPPFGPVGYALPPPPP 66
>Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical
protein E02A10.2 protein.
Length = 385
Score = 31.5 bits (68), Expect = 0.83
Identities = 15/27 (55%), Positives = 15/27 (55%)
Frame = -3
Query: 886 GGGGGGXKKXXSPGGGFXXKXPPPPPP 806
GGGGGG GGG PPPPPP
Sbjct: 93 GGGGGGCGGGGGCGGGCA---PPPPPP 116
Score = 29.5 bits (63), Expect = 3.4
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = -3
Query: 886 GGGGGGXKKXXSPGGGFXXKXPPPPPP 806
GGG GG GGG PPPPP
Sbjct: 89 GGGCGGGGGGCGGGGGCGGGCAPPPPP 115
Score = 29.1 bits (62), Expect = 4.4
Identities = 14/26 (53%), Positives = 14/26 (53%)
Frame = -3
Query: 883 GGGGGXKKXXSPGGGFXXKXPPPPPP 806
GGGGG GGG PPPPPP
Sbjct: 37 GGGGGCGGGGGCGGGCA---PPPPPP 59
>AF068713-14|AAK73895.1| 172|Caenorhabditis elegans Ground-like
(grd related) protein29 protein.
Length = 172
Score = 31.1 bits (67), Expect = 1.1
Identities = 14/26 (53%), Positives = 15/26 (57%)
Frame = -3
Query: 883 GGGGGXKKXXSPGGGFXXKXPPPPPP 806
GGGGG GGG+ PPPPPP
Sbjct: 50 GGGGGC----GYGGGYGCGIPPPPPP 71
Score = 29.5 bits (63), Expect = 3.4
Identities = 13/29 (44%), Positives = 14/29 (48%)
Frame = -1
Query: 888 GGGGGGGXKXPXPRGGXFXXKXPPPPPXP 802
GGG G G GG + PPPPP P
Sbjct: 44 GGGCGYGGGGGCGYGGGYGCGIPPPPPPP 72
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 30.7 bits (66), Expect = 1.5
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +1
Query: 841 PPPGXGXFXXPPPPPP 888
PPP G + PPPPPP
Sbjct: 289 PPPSSGMWPPPPPPPP 304
Score = 28.7 bits (61), Expect = 5.9
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = +3
Query: 822 GFXXKXPPPGXXXFXXPPPPPP 887
G + PPP PPPPPP
Sbjct: 282 GMTPRPPPPPSSGMWPPPPPPP 303
Score = 28.3 bits (60), Expect = 7.8
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = -1
Query: 888 GGGGGGGXKXPXPRGGXFXXKXPPPPP 808
G G GG P P G + PPPPP
Sbjct: 326 GPPGMGGMPPPPPPGMRYPGGMPPPPP 352
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 30.7 bits (66), Expect = 1.5
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +1
Query: 841 PPPGXGXFXXPPPPPP 888
PPP G + PPPPPP
Sbjct: 299 PPPSSGMWPPPPPPPP 314
Score = 28.7 bits (61), Expect = 5.9
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = +3
Query: 822 GFXXKXPPPGXXXFXXPPPPPP 887
G + PPP PPPPPP
Sbjct: 292 GMTPRPPPPPSSGMWPPPPPPP 313
Score = 28.3 bits (60), Expect = 7.8
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = -1
Query: 888 GGGGGGGXKXPXPRGGXFXXKXPPPPP 808
G G GG P P G + PPPPP
Sbjct: 336 GPPGMGGMPPPPPPGMRYPGGMPPPPP 362
>Z70312-3|CAA94385.1| 172|Caenorhabditis elegans Hypothetical
protein ZC168.5 protein.
Length = 172
Score = 30.3 bits (65), Expect = 1.9
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +1
Query: 841 PPPGXGXFXXPPPPPP 888
PPP G + PPPPPP
Sbjct: 44 PPPCGGGYEAPPPPPP 59
>AL132860-21|CAB60518.2| 759|Caenorhabditis elegans Hypothetical
protein Y56A3A.27 protein.
Length = 759
Score = 30.3 bits (65), Expect = 1.9
Identities = 14/34 (41%), Positives = 15/34 (44%)
Frame = -1
Query: 888 GGGGGGGXKXPXPRGGXFXXKXPPPPPXPXXKKK 787
G GGGGG GG PP PP P K +
Sbjct: 620 GPGGGGGPPRGPGGGGGGGPTGPPAPPKPPAKPR 653
>AF057032-1|AAC13567.1| 759|Caenorhabditis elegans DNA
topoisomerase III protein.
Length = 759
Score = 30.3 bits (65), Expect = 1.9
Identities = 14/34 (41%), Positives = 15/34 (44%)
Frame = -1
Query: 888 GGGGGGGXKXPXPRGGXFXXKXPPPPPXPXXKKK 787
G GGGGG GG PP PP P K +
Sbjct: 620 GPGGGGGPPRGPGGGGGGGPTGPPAPPKPPAKPR 653
>Z77662-5|CAB01192.2| 579|Caenorhabditis elegans Hypothetical
protein F47B8.5 protein.
Length = 579
Score = 29.9 bits (64), Expect = 2.5
Identities = 13/29 (44%), Positives = 13/29 (44%)
Frame = -1
Query: 888 GGGGGGGXKXPXPRGGXFXXKXPPPPPXP 802
GGGGGGG P PPP P P
Sbjct: 397 GGGGGGGEAAPPSSPPADAAPAPPPAPEP 425
>Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 29.5 bits (63), Expect = 3.4
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = -3
Query: 886 GGGGGGXKKXXSPGGGFXXKXPPPPPP 806
GGG G S GGG+ PPPP
Sbjct: 279 GGGSSGGYAGSSGGGGYSAPAAAPPPP 305
>Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 29.5 bits (63), Expect = 3.4
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = -3
Query: 886 GGGGGGXKKXXSPGGGFXXKXPPPPPP 806
GGG G S GGG+ PPPP
Sbjct: 279 GGGSSGGYAGSSGGGGYSAPAAAPPPP 305
>U64857-7|AAC25861.2| 373|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 8 protein.
Length = 373
Score = 29.5 bits (63), Expect = 3.4
Identities = 14/34 (41%), Positives = 14/34 (41%)
Frame = +3
Query: 786 FFFXXXXGGGGGGFXXKXPPPGXXXFXXPPPPPP 887
FF GG GGG P PPPPPP
Sbjct: 206 FFLNGGLGGTGGGGNNGFFVPVPVVIPPPPPPPP 239
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 29.5 bits (63), Expect = 3.4
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = +1
Query: 817 GGXFXXKXPPPGXGXFXXPPPPPP 888
GG PPP G PPPPPP
Sbjct: 766 GGCPPPPPPPPPGGFKGGPPPPPP 789
Score = 28.7 bits (61), Expect = 5.9
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = +1
Query: 841 PPPGXGXFXXPPPPPP 888
PPP G PPPPPP
Sbjct: 761 PPPPPGGCPPPPPPPP 776
Score = 28.7 bits (61), Expect = 5.9
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = -3
Query: 880 GGGGXKKXXSPGGGFXXKXPPPPPP 806
GG P GGF PPPPPP
Sbjct: 766 GGCPPPPPPPPPGGFKGGPPPPPPP 790
Score = 28.7 bits (61), Expect = 5.9
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = +3
Query: 840 PPPGXXXFXXPPPPPP 887
PPPG PPPPPP
Sbjct: 775 PPPGGFKGGPPPPPPP 790
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 29.5 bits (63), Expect = 3.4
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = +1
Query: 817 GGXFXXKXPPPGXGXFXXPPPPPP 888
GG PPP G PPPPPP
Sbjct: 766 GGCPPPPPPPPPGGFKGGPPPPPP 789
Score = 28.7 bits (61), Expect = 5.9
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = +1
Query: 841 PPPGXGXFXXPPPPPP 888
PPP G PPPPPP
Sbjct: 761 PPPPPGGCPPPPPPPP 776
Score = 28.7 bits (61), Expect = 5.9
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = -3
Query: 880 GGGGXKKXXSPGGGFXXKXPPPPPP 806
GG P GGF PPPPPP
Sbjct: 766 GGCPPPPPPPPPGGFKGGPPPPPPP 790
Score = 28.7 bits (61), Expect = 5.9
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = +3
Query: 840 PPPGXXXFXXPPPPPP 887
PPPG PPPPPP
Sbjct: 775 PPPGGFKGGPPPPPPP 790
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 29.5 bits (63), Expect = 3.4
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = +1
Query: 817 GGXFXXKXPPPGXGXFXXPPPPPP 888
GG PPP G PPPPPP
Sbjct: 349 GGCPPPPPPPPPGGFKGGPPPPPP 372
Score = 28.7 bits (61), Expect = 5.9
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = +1
Query: 841 PPPGXGXFXXPPPPPP 888
PPP G PPPPPP
Sbjct: 344 PPPPPGGCPPPPPPPP 359
Score = 28.7 bits (61), Expect = 5.9
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = -3
Query: 880 GGGGXKKXXSPGGGFXXKXPPPPPP 806
GG P GGF PPPPPP
Sbjct: 349 GGCPPPPPPPPPGGFKGGPPPPPPP 373
Score = 28.7 bits (61), Expect = 5.9
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = +3
Query: 840 PPPGXXXFXXPPPPPP 887
PPPG PPPPPP
Sbjct: 358 PPPGGFKGGPPPPPPP 373
>AF016446-2|AAC24165.1| 70|Caenorhabditis elegans Hypothetical
protein C02E7.6 protein.
Length = 70
Score = 29.5 bits (63), Expect = 3.4
Identities = 13/31 (41%), Positives = 13/31 (41%)
Frame = +1
Query: 793 FXXXXGGGGGXFXXKXPPPGXGXFXXPPPPP 885
F GGGGG PPP G PPP
Sbjct: 17 FLFPSGGGGGCGCAPPPPPACGCGGGAAPPP 47
>DQ178246-1|ABA18185.1| 482|Caenorhabditis elegans TPX2-related
alternative variant b protein.
Length = 482
Score = 28.7 bits (61), Expect = 5.9
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Frame = -3
Query: 292 PKTT*ALSKPPVSSRFPKTSPTPANSV--TGFSPIGSAT 182
P TT + KPPV+S + PT A SV +G PI ++T
Sbjct: 386 PSTT--IKKPPVASSVQRQPPTRARSVDRSGQPPISAST 422
>DQ178245-1|ABA18184.1| 507|Caenorhabditis elegans TPX2-related
alternative variant a protein.
Length = 507
Score = 28.7 bits (61), Expect = 5.9
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Frame = -3
Query: 292 PKTT*ALSKPPVSSRFPKTSPTPANSV--TGFSPIGSAT 182
P TT + KPPV+S + PT A SV +G PI ++T
Sbjct: 386 PSTT--IKKPPVASSVQRQPPTRARSVDRSGQPPISAST 422
>AC025716-4|AAL32238.1| 482|Caenorhabditis elegans Tpx2 (targeting
protein for xenopusklp2)-like protein 1, isoform b
protein.
Length = 482
Score = 28.7 bits (61), Expect = 5.9
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Frame = -3
Query: 292 PKTT*ALSKPPVSSRFPKTSPTPANSV--TGFSPIGSAT 182
P TT + KPPV+S + PT A SV +G PI ++T
Sbjct: 386 PSTT--IKKPPVASSVQRQPPTRARSVDRSGQPPISAST 422
>AC025716-2|AAK39617.1| 507|Caenorhabditis elegans Tpx2 (targeting
protein for xenopusklp2)-like protein 1, isoform a
protein.
Length = 507
Score = 28.7 bits (61), Expect = 5.9
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Frame = -3
Query: 292 PKTT*ALSKPPVSSRFPKTSPTPANSV--TGFSPIGSAT 182
P TT + KPPV+S + PT A SV +G PI ++T
Sbjct: 386 PSTT--IKKPPVASSVQRQPPTRARSVDRSGQPPISAST 422
>U55366-3|AAY86188.1| 118|Caenorhabditis elegans Hypothetical
protein F41F3.8 protein.
Length = 118
Score = 28.3 bits (60), Expect = 7.8
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = -1
Query: 888 GGGGGGGXKXPXPRGG 841
GGGGGGG PRGG
Sbjct: 82 GGGGGGGGYASYPRGG 97
>D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like protein
protein.
Length = 346
Score = 28.3 bits (60), Expect = 7.8
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = -1
Query: 888 GGGGGGGXKXPXPRGG 841
GGGGGGG P RGG
Sbjct: 222 GGGGGGGWGGPAQRGG 237
>AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform b protein.
Length = 309
Score = 28.3 bits (60), Expect = 7.8
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = -1
Query: 888 GGGGGGGXKXPXPRGG 841
GGGGGGG P RGG
Sbjct: 184 GGGGGGGWGGPAQRGG 199
>AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform c protein.
Length = 308
Score = 28.3 bits (60), Expect = 7.8
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = -1
Query: 888 GGGGGGGXKXPXPRGG 841
GGGGGGG P RGG
Sbjct: 184 GGGGGGGWGGPAQRGG 199
>AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform d protein.
Length = 347
Score = 28.3 bits (60), Expect = 7.8
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = -1
Query: 888 GGGGGGGXKXPXPRGG 841
GGGGGGG P RGG
Sbjct: 222 GGGGGGGWGGPAQRGG 237
>AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform a protein.
Length = 346
Score = 28.3 bits (60), Expect = 7.8
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = -1
Query: 888 GGGGGGGXKXPXPRGG 841
GGGGGGG P RGG
Sbjct: 222 GGGGGGGWGGPAQRGG 237
>AC025721-11|AAK29900.1| 78|Caenorhabditis elegans Hypothetical
protein Y48G8AL.12 protein.
Length = 78
Score = 28.3 bits (60), Expect = 7.8
Identities = 14/32 (43%), Positives = 14/32 (43%)
Frame = +3
Query: 789 FFXXXXGGGGGGFXXKXPPPGXXXFXXPPPPP 884
F GGGGGG PPP PPP P
Sbjct: 17 FLFPSAGGGGGGCGCGAPPP--PPACAPPPAP 46
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,859,950
Number of Sequences: 27780
Number of extensions: 329167
Number of successful extensions: 5655
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 1206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4155
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2244863852
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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