Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_H14
         (888 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    24   2.1  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          23   4.9  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    23   4.9  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   4.9  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    22   6.5  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = +1

Query: 160 HHKNIETLLLSQWVR 204
           HH+N +T  +S+WV+
Sbjct: 319 HHRNADTHEMSEWVK 333


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -3

Query: 490 NYIMYIISNNAIIKYNKCYMDKNYK 416
           N   YI++ N   KY + Y D  YK
Sbjct: 196 NIETYIVNTNYSSKYMREYNDPEYK 220


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -3

Query: 490 NYIMYIISNNAIIKYNKCYMDKNY 419
           NY  Y  +NN    Y K Y + NY
Sbjct: 100 NYNNYNYNNNNYNNYKKLYYNINY 123


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
 Frame = +1

Query: 106 LFLSISTINKVFYXKC--RVHHKNIETLLLSQWVRNQ*QNW 222
           LF  I     ++   C   VH ++  T  +S WVR    NW
Sbjct: 317 LFTMILVTLSIWITVCVLNVHFRSPSTHNMSPWVRQVFLNW 357


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +1

Query: 397 RIGVMSFCNFYPYN 438
           R+GV SFC  +P++
Sbjct: 285 RMGVASFCKAFPWH 298


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,606
Number of Sequences: 438
Number of extensions: 4853
Number of successful extensions: 28
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28662543
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)