Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_H11
         (881 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    30   0.50 
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ...    28   1.5  
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    28   1.5  
SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalyti...    28   2.0  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   2.7  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    27   2.7  
SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|ch...    27   4.7  
SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyce...    26   6.2  

>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 29.9 bits (64), Expect = 0.50
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = +2

Query: 110 LSKVVIIQYSCYSLHYF*TITRNFIYS 190
           L++ +I+ YS  S+H   T+TR FIYS
Sbjct: 529 LNRRLILHYSFESVHQLKTLTRKFIYS 555


>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1147

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 7/115 (6%)
 Frame = +3

Query: 453  SNMQRQAISQAFT-REYGRDLIEDLKSELGGHFEDVIVALMTPPE--EYLCQELHRCMEG 623
            +N++ Q + Q  T  ++  +  +  +  +G  FE+ I  L    E  + L   LH  +  
Sbjct: 753  TNLEDQLVDQTVTINKFAFERDQFRERSMG--FENTIKDLTRKMEATDMLNVSLHESLRS 810

Query: 624  MGTDEDTLVEILCTRTKPEIA---AIVDTYERLYDRPLAEHMCSET-SGDFRRLL 776
            + T+   LV  +    K E+    AI+D    +YD+  A+H   ET S D  + L
Sbjct: 811  VQTENSELVTEMAL-LKAELVKKQAIIDANANIYDKLTADHTNYETVSADINQNL 864


>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 262

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
 Frame = -2

Query: 757 PDVSEHMCSASGRSYNRSYVSTIAAISGLVLVQRISTRVSSS-VPIPSMQRCSSWHRYSS 581
           P+V   M      S + SY  T  + +       + T  +++ +P+P  +R S    Y+S
Sbjct: 145 PNVMSQMPPPPSYSSSGSYSQTYQSNANYTASSPLPTASANAPLPVPPPRRVSQNSSYAS 204

Query: 580 GGVIRATITSSK*P 539
           G V  AT  S+  P
Sbjct: 205 GSVPAATAASTASP 218


>SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalytic
           subunit Cdc6 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 13/23 (56%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = +3

Query: 249 FGSAENRRSPF-SIFDTNPRILT 314
           +G   N +SPF  IF TNPRIL+
Sbjct: 180 YGFQGNEKSPFIKIFTTNPRILS 202


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 31/105 (29%), Positives = 43/105 (40%), Gaps = 5/105 (4%)
 Frame = -2

Query: 793 PTTMS--VRRRRKSPDVSEHMCSASGRSYNRSYVSTIAAISGLVLVQRISTRVSSSVPIP 620
           PT+ S  +     SP  S    + S    + S+ ST+++ S        S+  SSS P  
Sbjct: 336 PTSSSSTISSSSSSPSSSSFSSTTSSSKSSSSFSSTVSSSSSTSSSTLTSSSSSSSRPAS 395

Query: 619 SMQRCSSW--HRYSSGGVIRATITSSK*PPNS-DFRSSMRSLPYS 494
           S    SS   H+ SS     +   SS    NS   RSS  S  +S
Sbjct: 396 SSSHSSSLSSHKSSSSSKSSSAPVSSAFYHNSTSSRSSSHSSSHS 440


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
 Frame = -2

Query: 760 SPDVSEHMCSASGRSYNRSYV---STIAAISGLVLVQRISTRVSSSVPIPSMQRCSSWHR 590
           S  +S    S+S  +Y+ S +   ST+ + S  ++V       SSS PIPS     S + 
Sbjct: 651 SSSISTIPISSSLSTYSSSVIPSSSTLVSSSSSLIVSSSPVASSSSSPIPSSSSLVSTYS 710

Query: 589 YSSGGVIRATITSSK*PPNSDFRSSMRS 506
            S   +  ++++ +    +S   +S+ S
Sbjct: 711 ASLSNITHSSLSLTAMSSSSAIPTSVNS 738


>SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 979

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = +3

Query: 132 NIVVIHYTISKQ*REILYTALIKINCFFYNSHTVSP 239
           N+  +HY   K+    L   LI  NCF YNSH   P
Sbjct: 352 NLKNLHYNSKKEFVHDLM--LIWSNCFLYNSHPDHP 385


>SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 344

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -3

Query: 687 RLSPAWFWCRGSRRGCLHPCPYPPCN 610
           ++ P  +W    RR CL   PYP  N
Sbjct: 102 KVFPKVYWIFNHRRWCLENAPYPNWN 127


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,477,814
Number of Sequences: 5004
Number of extensions: 72726
Number of successful extensions: 187
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)