Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_H08
         (900 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC821.05 |||translation initiation factor eIF3h|Schizosaccharo...    28   2.1  
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    26   6.3  
SPBC800.10c |||EPS15 repeat family actin cortical patch componen...    26   6.3  

>SPAC821.05 |||translation initiation factor
           eIF3h|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 357

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -3

Query: 343 GWYVAKKISSFIFQPFFCPRFLRYRE 266
           GWY+   +SSF+  PFF      Y++
Sbjct: 106 GWYLGAYVSSFLSSPFFVETQYAYQK 131


>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 583

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 17/57 (29%), Positives = 25/57 (43%)
 Frame = -2

Query: 314 IYFPTFFLPQVSTISRKVLRSNRQPGDDSAILIYGILGLLKSTLLSFHYQEKEQGVF 144
           IY    F+PQ   + R        P  +  +L+  I+G+ K  + S    EK  GVF
Sbjct: 460 IYVREAFVPQNHPVLRAPSLFTDSPTYEDMLLLNSIIGIEKPPVASQKDLEKAGGVF 516


>SPBC800.10c |||EPS15 repeat family actin cortical patch component
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1116

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = -2

Query: 470 TSAMPGAEPSRCLPLNTLHKPRLKKDMS*RSGNTVEGSSFHSRMVRG 330
           TS++P    S     NTL  P L  + S    +TV  + FH+  + G
Sbjct: 740 TSSVPTQHNSFDAMHNTLRSPSLNSNNSSAHASTVSRNPFHNLKISG 786


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,376,720
Number of Sequences: 5004
Number of extensions: 48004
Number of successful extensions: 114
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)