Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_H08
         (900 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   3.8  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   3.8  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          23   5.0  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      23   5.0  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -1

Query: 504 PPDGEWLPSPMDFSNARG 451
           PPD  W P  + F+NA G
Sbjct: 104 PPDKVWKPDIVLFNNADG 121


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = -2

Query: 224 ILIYGILGLLKSTLLSFHYQEKEQGVFFSNAYI 126
           ILI G+  ++       HY  +E  +   N+Y+
Sbjct: 780 ILINGVWMIIDPAKAMHHYPTREDNLLVCNSYV 812


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -2

Query: 239 GDDSAILIYGILGLLKSTLLSFHYQ 165
           GD   + +YG L LL   +L F Y+
Sbjct: 369 GDSVNVQLYGQLDLLVRKVLGFGYE 393


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -2

Query: 239 GDDSAILIYGILGLLKSTLLSFHYQ 165
           GD   + +YG L LL   +L F Y+
Sbjct: 369 GDSVNVQLYGQLDLLVRKVLGFGYE 393


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,009
Number of Sequences: 438
Number of extensions: 3556
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29146299
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)