Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP10_F_H03
(867 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC26A3.04 |rpl2002|rpl20, rpl20-2|60S ribosomal protein L20|Sc... 176 4e-45
SPAC3A12.10 |rpl2001|rpl20-1, rpl20, yl17b, rpl18a-2|60S ribosom... 176 4e-45
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro... 28 1.5
SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Sch... 27 2.6
SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein L19B|Schizosa... 26 6.0
SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein L19|Schizosac... 26 8.0
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 26 8.0
>SPAC26A3.04 |rpl2002|rpl20, rpl20-2|60S ribosomal protein
L20|Schizosaccharomyces pombe|chr 1|||Manual
Length = 176
Score = 176 bits (428), Expect = 4e-45
Identities = 89/174 (51%), Positives = 114/174 (65%), Gaps = 4/174 (2%)
Frame = +3
Query: 90 LREYEVIGRKLPSENEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVXXXX 269
L+EY+V+GRK+P+E+EP P L++MR+F+P+ VAKSR+WYFL+ + K KK TGEIV
Sbjct: 3 LKEYQVVGRKVPTEHEPVPKLFRMRLFAPNESVAKSRYWYFLKMINKVKKATGEIVAINE 62
Query: 270 XXXXXXXXXXNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQI 449
FGIW+RY+SRSG HNMY+E+RD + GAV Y DM ARHRAR SI+I
Sbjct: 63 ISEPKPLKAKVFGIWIRYDSRSGTHNMYKEFRDTTRVGAVEAMYADMAARHRARFRSIRI 122
Query: 450 IK-VEVIKAAACRRPQVKQFHNSTIRFPLPKR---VHHYKRLNTFAYKRPSTYF 599
+K VEV K RR VKQ N ++FPLP R V FA RPST++
Sbjct: 123 LKVVEVEKKEDVRRNYVKQLLNPHLKFPLPHRRTGVVGLAGKKVFAPHRPSTFY 176
>SPAC3A12.10 |rpl2001|rpl20-1, rpl20, yl17b, rpl18a-2|60S ribosomal
protein L20a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 176
Score = 176 bits (428), Expect = 4e-45
Identities = 89/174 (51%), Positives = 114/174 (65%), Gaps = 4/174 (2%)
Frame = +3
Query: 90 LREYEVIGRKLPSENEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVXXXX 269
L+EY+V+GRK+P+E+EP P L++MR+F+P+ VAKSR+WYFL+ + K KK TGEIV
Sbjct: 3 LKEYQVVGRKVPTEHEPVPKLFRMRLFAPNESVAKSRYWYFLKMINKVKKATGEIVAINE 62
Query: 270 XXXXXXXXXXNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQI 449
FGIW+RY+SRSG HNMY+E+RD + GAV Y DM ARHRAR SI+I
Sbjct: 63 ISEPKPLKAKVFGIWIRYDSRSGTHNMYKEFRDTTRVGAVEAMYADMAARHRARFRSIRI 122
Query: 450 IK-VEVIKAAACRRPQVKQFHNSTIRFPLPKR---VHHYKRLNTFAYKRPSTYF 599
+K VEV K RR VKQ N ++FPLP R V FA RPST++
Sbjct: 123 LKVVEVEKKEDVRRNYVKQLLNPHLKFPLPHRRTGVVGLAGKKVFAPHRPSTFY 176
>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1385
Score = 28.3 bits (60), Expect = 1.5
Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
Frame = +1
Query: 97 NMRLSAVSSRRRTSPNLPCIK*EFSLRIQLSPNLVSGIS*DNLRSSRRPLVKLSLLRKFQ 276
N+ + +V R S I S ++ P++V S D+ + SRRP + S RKF
Sbjct: 271 NITVESVRGFLRDSSKPDNIMDSPSPKVSKRPSIVRQDSHDSNKLSRRPTINTSFDRKFS 330
Query: 277 RK---APSRLRILVSGYAMSL 330
K PS + L G SL
Sbjct: 331 PKLTRTPSLTKSLDPGTPTSL 351
>SPAC57A7.08 |pzh1||serine/threonine protein phosphatase
Pzh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 515
Score = 27.5 bits (58), Expect = 2.6
Identities = 19/71 (26%), Positives = 29/71 (40%)
Frame = +2
Query: 350 VP*IP*PECRWSCHSVLQRYGS*TQSPSSFNTDYQSGSNQGCCVSPSTGQTVPQQHHQIP 529
+P P P + +VLQ++ SS + SNQ +SPST + HH
Sbjct: 68 LPPPPSPGILATSPAVLQKHQQEDSGNSSQSPTSPHPSNQPAMLSPSTAASQHHHHHSSS 127
Query: 530 IAQTCAPLQET 562
+ +P T
Sbjct: 128 SSYAVSPTSPT 138
>SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein
L19B|Schizosaccharomyces pombe|chr 3|||Manual
Length = 193
Score = 26.2 bits (55), Expect = 6.0
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = +1
Query: 175 RIQLSPNLVSGIS*DNLRSSRRPLVKLSLLRKFQRKAPSRLRI 303
++ + PN +S IS N R + R LVK L+ + SR RI
Sbjct: 21 KVWMDPNEISEISNANSRQNIRKLVKDGLVIRKPNLMHSRFRI 63
>SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein
L19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 193
Score = 25.8 bits (54), Expect = 8.0
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +1
Query: 175 RIQLSPNLVSGIS*DNLRSSRRPLVKLSLLRKFQRKAPSRLRI 303
++ + PN +S IS N R + R L+K L+ + SR RI
Sbjct: 21 KVWMDPNEISEISNANSRQNVRKLIKDGLVIRKPNLMHSRFRI 63
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1428
Score = 25.8 bits (54), Expect = 8.0
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = +3
Query: 93 REYEVIGRKLPSENEPKPPLYKMRIFSPDPIVAKSRFWY 209
+E V+ + E P +R +SP+ ++ S FWY
Sbjct: 470 QEILVLKSSIEKEKVEIVPFLDIRKYSPNEVLCMSPFWY 508
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,693,443
Number of Sequences: 5004
Number of extensions: 55071
Number of successful extensions: 138
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -