Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_H02
         (945 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    34   0.034
SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomy...    31   0.24 
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    28   2.2  

>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 33.9 bits (74), Expect = 0.034
 Identities = 14/35 (40%), Positives = 16/35 (45%)
 Frame = +3

Query: 693 PPSTPRXPVXXXKIGPPTXHPNXPXFPPXXXPSEP 797
           PPS P  P    ++ PPT  P  P  PP    S P
Sbjct: 124 PPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAP 158


>SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 523

 Score = 31.1 bits (67), Expect = 0.24
 Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
 Frame = +3

Query: 306 DVXLAAEGRLLQAHKLVLSVCSPYFQEMF-KMNPTQHPIVFLKDVSHSA--LRDLLQFMY 476
           D+  A +   + AHK  L+  S YF+  F K+ P++H I    +V H A     +L+++Y
Sbjct: 168 DIVFAGQYGRVFAHKFYLAARSSYFKSKFSKLGPSEHEI----EVKHFAKEFESILRYLY 223


>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 19/77 (24%), Positives = 30/77 (38%), Gaps = 3/77 (3%)
 Frame = +3

Query: 555 PVIKMKXVHAIP---NQSPTSRXXPPGSAXXKTIWLLPKXRXLXXXFLXPPSTPRXPVXX 725
           P   M     +P   + + T+   PP +    T  ++P    +    + PP+T    V  
Sbjct: 86  PTTSMNTTTTVPPTTSLNTTTTTAPPTTHVNSTTTVVPPTTHVNTTTVVPPTTH---VNT 142

Query: 726 XKIGPPTXHPNXPXFPP 776
             + PPT H N   F P
Sbjct: 143 TTVVPPTTHANTTSFVP 159



 Score = 26.6 bits (56), Expect = 5.1
 Identities = 15/60 (25%), Positives = 24/60 (40%)
 Frame = +3

Query: 579 HAIPNQSPTSRXXPPGSAXXKTIWLLPKXRXLXXXFLXPPSTPRXPVXXXKIGPPTXHPN 758
           H++ + + TS   PP ++   T   +P    +      PP+T           PPT H N
Sbjct: 59  HSVTSTNITSIVPPPSTSHNSTTTTVPPTTSMNTTTTVPPTTSLNTT--TTTAPPTTHVN 116


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,996,695
Number of Sequences: 5004
Number of extensions: 54042
Number of successful extensions: 130
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 481321826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)