Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP10_F_G19
(896 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein L10|Sch... 236 3e-63
SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein L10|Sc... 236 4e-63
SPBC1105.03c |mrpl16||mitochondrial ribosomal protein subunit L1... 27 3.6
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 27 3.6
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 4.8
SPBC651.10 |nse5||Smc5-6 complex non-SMC subunit Nse5|Schizosacc... 27 4.8
SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual 26 6.3
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ... 26 6.3
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 26 6.3
SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyce... 26 8.4
>SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein
L10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 221
Score = 236 bits (578), Expect = 3e-63
Identities = 110/162 (67%), Positives = 132/162 (81%)
Frame = +1
Query: 151 RFCRGVPESQESVSSIWVRKRANVDDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVKN 330
R+ R VP+S+ + + RKRA VD+FPLC+HLVS+EYEQ++SEALEA RIC NKYLVK
Sbjct: 21 RYNRAVPDSKIRIFDLG-RKRAGVDEFPLCIHLVSNEYEQITSEALEAARICANKYLVKI 79
Query: 331 CGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVR 510
GKD FH+R+R HPFHV+RINKMLSCAGADRLQTGMR AFGKP G VARV IGQ +MSVR
Sbjct: 80 GGKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFGKPNGLVARVNIGQVLMSVR 139
Query: 511 SXDRWKAQVIEALRRAKFKFPGRQXIYVSKKWGFTKYERDXF 636
+ D +A IEALRR ++KFPG+Q I VSKKWGF++Y RD +
Sbjct: 140 TKDSSRATAIEALRRCQYKFPGQQRIIVSKKWGFSQYARDEY 181
Score = 52.8 bits (121), Expect = 6e-08
Identities = 25/43 (58%), Positives = 31/43 (72%)
Frame = +3
Query: 87 MGRRPSEECYRYCKNKPYPKSKVLSGCT*IPRIRIFDLGKKES 215
M RRP+ CYRYCKNKPYPKS+ + +IRIFDLG+K +
Sbjct: 1 MARRPAR-CYRYCKNKPYPKSR-YNRAVPDSKIRIFDLGRKRA 41
>SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein
L10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 221
Score = 236 bits (577), Expect = 4e-63
Identities = 110/162 (67%), Positives = 132/162 (81%)
Frame = +1
Query: 151 RFCRGVPESQESVSSIWVRKRANVDDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVKN 330
R+ R VP+S+ + + RKRA VD+FPLC+HLVS+EYEQ++SEALEA RIC NKYLVK
Sbjct: 21 RYNRAVPDSKIRIFDLG-RKRAGVDEFPLCIHLVSNEYEQITSEALEAARICANKYLVKI 79
Query: 331 CGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVR 510
GKD FH+R+R HPFHV+RINKMLSCAGADRLQTGMR AFGKP G VARV IGQ +MSVR
Sbjct: 80 GGKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFGKPNGLVARVNIGQILMSVR 139
Query: 511 SXDRWKAQVIEALRRAKFKFPGRQXIYVSKKWGFTKYERDXF 636
+ D +A IEALRR ++KFPG+Q I VSKKWGF++Y RD +
Sbjct: 140 TKDSSRATAIEALRRCQYKFPGQQRIIVSKKWGFSQYARDEY 181
Score = 52.8 bits (121), Expect = 6e-08
Identities = 25/43 (58%), Positives = 31/43 (72%)
Frame = +3
Query: 87 MGRRPSEECYRYCKNKPYPKSKVLSGCT*IPRIRIFDLGKKES 215
M RRP+ CYRYCKNKPYPKS+ + +IRIFDLG+K +
Sbjct: 1 MARRPAR-CYRYCKNKPYPKSR-YNRAVPDSKIRIFDLGRKRA 41
>SPBC1105.03c |mrpl16||mitochondrial ribosomal protein subunit
L16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 215
Score = 27.1 bits (57), Expect = 3.6
Identities = 21/83 (25%), Positives = 31/83 (37%), Gaps = 4/83 (4%)
Frame = +1
Query: 364 LHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGT----VARVRIGQPIMSVRSXDRWKA 531
L P R+ C G GK +G AR+ IG+ + + K
Sbjct: 100 LKPIKAARVYTRF-CCNVPVCVKGNETRMGKGKGAFEYWAARIPIGRVLFEIGGDGMRKE 158
Query: 532 QVIEALRRAKFKFPGRQXIYVSK 600
AL++A F PG+ I V +
Sbjct: 159 LAEHALKQAAFHLPGKYEIIVKQ 181
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 27.1 bits (57), Expect = 3.6
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +1
Query: 121 TAKINRIRNRRFCRGVPESQ 180
T+++NR+ NRR GV +SQ
Sbjct: 744 TSRMNRVNNRRLAAGVEKSQ 763
>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1038
Score = 26.6 bits (56), Expect = 4.8
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = -3
Query: 468 STLRLAKRTTHPSLEPISSSAR-*HFIDADNVERVKSHAD 352
+T +LAKR T PSL P S+ H I + ++ KS A+
Sbjct: 957 TTTKLAKRITQPSLSPARSTVTITHNIATEAKKKSKSAAN 996
>SPBC651.10 |nse5||Smc5-6 complex non-SMC subunit
Nse5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 26.6 bits (56), Expect = 4.8
Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = -2
Query: 331 SSLRGTYC-SRYVLPPKPLSSAVHIRRTPSARTVESRQRSLSFLPKSKIR 185
S+LR YC S+Y+L K + ++IR T T + Q + LPK+KIR
Sbjct: 269 SNLR--YCLSQYILM-KGIGIGINIRHTRCEFTKQLTQLLPTSLPKNKIR 315
>SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 405
Score = 26.2 bits (55), Expect = 6.3
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = +1
Query: 151 RFCRGVPESQESVSSIWVRKRANVDDFPLCVHLVSDEYEQLSSEALEAG 297
+FC V + + KRA +D LC+ +S + E ++ +LE+G
Sbjct: 46 KFCYEVYNEIKISDKEFKEKRAALDTLRLCLKRISPDAELVAFGSLESG 94
>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
membrane transporter Hmt1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 830
Score = 26.2 bits (55), Expect = 6.3
Identities = 9/32 (28%), Positives = 16/32 (50%)
Frame = -3
Query: 189 YGFLGFRYTPTEPSISDTVYFCSTGSILRLAG 94
+ + F Y P +P +SD + G ++ L G
Sbjct: 586 FSHVSFAYDPRKPVLSDINFVAQPGKVIALVG 617
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 26.2 bits (55), Expect = 6.3
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 8/73 (10%)
Frame = +1
Query: 145 NRRFCRGVPESQESVSSIWV---RKRANVDDFPLCVHLVSDEYEQL---SSEALEAGRIC 306
N R + + E+++S+ +KRA DD + +VS EYE L SS+ ++
Sbjct: 1013 NERLMDDLKNNGENIASLQTEIEKKRAENDDLQSKLSVVSSEYENLLLISSQTNKSLEDK 1072
Query: 307 CN--KYLVKNCGK 339
N KY+ KN K
Sbjct: 1073 TNQLKYIEKNVQK 1085
>SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 496
Score = 25.8 bits (54), Expect = 8.4
Identities = 21/75 (28%), Positives = 30/75 (40%)
Frame = -2
Query: 301 YVLPPKPLSSAVHIRRTPSARTVESRQRSLSFLPKSKIRILGIQVHPDRTFDFGYGLFLQ 122
Y L P +SAV I R + + +PK +I L HP R+ L L
Sbjct: 27 YALSTPPGTSAVAIVRISGPNACKVAKTLAGSVPKPRIASLRTIKHPVRSEVIDKALMLY 86
Query: 121 YR*HSSLGRRPMVXL 77
++ SS +V L
Sbjct: 87 FKKPSSFTGEDVVEL 101
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,984,999
Number of Sequences: 5004
Number of extensions: 60245
Number of successful extensions: 200
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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