Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP10_F_G19
(896 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0740 + 6243517-6243526,6244822-6245323,6245415-6245496,624... 231 7e-61
03_02_0897 - 12239375-12239458,12240035-12240116,12240213-122407... 230 1e-60
05_01_0490 + 4083768-4083775,4083845-4084336,4084441-4084522,408... 226 2e-59
04_01_0441 - 5750765-5750822,5750936-5751026,5751112-5751313,575... 38 0.008
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287... 31 1.6
10_08_0141 + 15159160-15159306,15159708-15159815,15159958-151600... 29 3.8
10_02_0113 + 5410413-5410471,5411330-5413309,5413535-5413594,541... 29 6.6
02_05_0655 + 30668706-30668849,30669043-30669471 29 6.6
04_01_0289 + 3830052-3831134,3831141-3831230,3831494-3831525,383... 28 8.8
>11_01_0740 +
6243517-6243526,6244822-6245323,6245415-6245496,
6245741-6245821
Length = 224
Score = 231 bits (564), Expect = 7e-61
Identities = 108/169 (63%), Positives = 131/169 (77%)
Frame = +1
Query: 151 RFCRGVPESQESVSSIWVRKRANVDDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVKN 330
R+CRGVP+ + + + ++K+ VD+FP CVHLVS E E +SSEALEA RI CNKY+ KN
Sbjct: 21 RYCRGVPDPKIRIYDVGMKKKG-VDEFPYCVHLVSWEKENVSSEALEAARIACNKYMTKN 79
Query: 331 CGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVR 510
GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT ARV IGQ ++SVR
Sbjct: 80 AGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLSVR 139
Query: 511 SXDRWKAQVIEALRRAKFKFPGRQXIYVSKKWGFTKYERDXFEXLX*KG 657
+ EALRRAKFKFPGRQ I S+KWGFTK+ R+ + L +G
Sbjct: 140 CKESNAKHAEEALRRAKFKFPGRQKIIHSRKWGFTKFTREEYVKLKAEG 188
Score = 50.4 bits (115), Expect = 2e-06
Identities = 24/42 (57%), Positives = 30/42 (71%)
Frame = +3
Query: 87 MGRRPSEECYRYCKNKPYPKSKVLSGCT*IPRIRIFDLGKKE 212
MGRRP+ CYR KNKPYPKS+ G P+IRI+D+G K+
Sbjct: 1 MGRRPAR-CYRQIKNKPYPKSRYCRGVP-DPKIRIYDVGMKK 40
>03_02_0897 -
12239375-12239458,12240035-12240116,12240213-12240714,
12241150-12241303,12241458-12241629,12242237-12242443,
12242926-12243323
Length = 532
Score = 230 bits (562), Expect = 1e-60
Identities = 108/169 (63%), Positives = 130/169 (76%)
Frame = +1
Query: 151 RFCRGVPESQESVSSIWVRKRANVDDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVKN 330
R+CRGVP+ + + + +KR+ DDFPLCVHLVS E E +SSEALEA RI CNKY+ K+
Sbjct: 328 RYCRGVPDPKIRIFDVGQKKRS-ADDFPLCVHLVSWEKENVSSEALEAARIACNKYMAKH 386
Query: 331 CGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVR 510
GKD FH+R+ HP+HV+RINKMLSCAGADRLQTGMRGAFGKP GT ARVRIGQ ++SVR
Sbjct: 387 AGKDAFHLRVCAHPYHVLRINKMLSCAGADRLQTGMRGAFGKPTGTCARVRIGQVLLSVR 446
Query: 511 SXDRWKAQVIEALRRAKFKFPGRQXIYVSKKWGFTKYERDXFEXLX*KG 657
D A EALRRAKFKFPGRQ + S KWGFT+++RD + L +G
Sbjct: 447 CRDANAAHAQEALRRAKFKFPGRQRVIFSAKWGFTRFKRDEYLKLKSEG 495
Score = 45.2 bits (102), Expect = 7e-05
Identities = 20/34 (58%), Positives = 25/34 (73%)
Frame = +3
Query: 111 CYRYCKNKPYPKSKVLSGCT*IPRIRIFDLGKKE 212
CYR KNKPYPKS+ G P+IRIFD+G+K+
Sbjct: 315 CYRQIKNKPYPKSRYCRGVP-DPKIRIFDVGQKK 347
>05_01_0490 +
4083768-4083775,4083845-4084336,4084441-4084522,
4086671-4087357,4087555-4087813,4088435-4088558,
4089474-4089564
Length = 580
Score = 226 bits (552), Expect = 2e-59
Identities = 106/169 (62%), Positives = 129/169 (76%)
Frame = +1
Query: 151 RFCRGVPESQESVSSIWVRKRANVDDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVKN 330
R+CRGVP+ + + + ++K+ VD+F CVHLVS E E ++SEALEA RI CNKY+ K+
Sbjct: 17 RYCRGVPDPKIRIYDVGMKKKG-VDEFSHCVHLVSWEKENVTSEALEAARIACNKYMTKS 75
Query: 331 CGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVR 510
GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT ARV IGQ ++SVR
Sbjct: 76 AGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLSVR 135
Query: 511 SXDRWKAQVIEALRRAKFKFPGRQXIYVSKKWGFTKYERDXFEXLX*KG 657
EALRRAKFKFPGRQ I S+KWGFTK+ RD + L +G
Sbjct: 136 CKPNNAVHASEALRRAKFKFPGRQKIIESRKWGFTKFSRDEYVRLKSEG 184
Score = 43.2 bits (97), Expect = 3e-04
Identities = 19/34 (55%), Positives = 24/34 (70%)
Frame = +3
Query: 111 CYRYCKNKPYPKSKVLSGCT*IPRIRIFDLGKKE 212
CYR KNKPYPKS+ G P+IRI+D+G K+
Sbjct: 4 CYRQIKNKPYPKSRYCRGVP-DPKIRIYDVGMKK 36
>04_01_0441 -
5750765-5750822,5750936-5751026,5751112-5751313,
5751392-5752033,5752175-5752409,5752500-5752619,
5752864-5753282
Length = 588
Score = 38.3 bits (85), Expect = 0.008
Identities = 19/57 (33%), Positives = 30/57 (52%)
Frame = -2
Query: 355 GYGTDPFRSSLRGTYCSRYVLPPKPLSSAVHIRRTPSARTVESRQRSLSFLPKSKIR 185
GY T P + + R ++ P K SS +++ SA T++ LSFLPKS ++
Sbjct: 415 GYDTPPLKMAKRSARTKLFMTPTKDASSMDEKKQSTSASTLDGDDELLSFLPKSLLQ 471
>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
2879715-2879973,2880060-2880346,2880423-2880758,
2880862-2881003,2881077-2881297,2881379-2881540,
2881617-2881775,2881860-2882159,2882834-2883097,
2883133-2883243,2883902-2883988
Length = 1871
Score = 30.7 bits (66), Expect = 1.6
Identities = 10/31 (32%), Positives = 21/31 (67%)
Frame = -1
Query: 497 MGCPMRTRATVP*GLPNAPRIPVWSLSAPAH 405
+ CP+ + + VP LP++P P++S ++P +
Sbjct: 1625 LSCPLTSPSYVPTSLPHSPTSPIYSATSPIY 1655
>10_08_0141 +
15159160-15159306,15159708-15159815,15159958-15160006,
15160067-15160182,15160358-15160399,15161026-15161442,
15162356-15162509,15162911-15162975,15163793-15163870,
15163951-15164061,15164227-15164271,15164677-15164850,
15165383-15166335,15166471-15166681,15167037-15167196,
15168786-15169174
Length = 1072
Score = 29.5 bits (63), Expect = 3.8
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +1
Query: 232 PLC-VHLVSDEYEQLSSEALEAGRICCNKYLVKNCG 336
P C +HL SD Y S E ++AG+ C L K G
Sbjct: 592 PRCDIHLKSDGYTNYSLETVQAGKQQCKAALQKELG 627
>10_02_0113 + 5410413-5410471,5411330-5413309,5413535-5413594,
5416037-5418047
Length = 1369
Score = 28.7 bits (61), Expect = 6.6
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Frame = -3
Query: 249 QVHAQWKVVNVR-SL--SYPNRRYGFLGFRYTPTEPSISDTVYFCSTGSILRL 100
QV +K+V ++ SL Y +YG L FR I+ + FCST LRL
Sbjct: 968 QVEMAYKLVEIQLSLIYDYMYTKYGALQFRLGLVYSVIARLITFCSTSVALRL 1020
>02_05_0655 + 30668706-30668849,30669043-30669471
Length = 190
Score = 28.7 bits (61), Expect = 6.6
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = -2
Query: 292 PPKPLSSAVHIRRTPSARTVESRQRSLSFLPKSKIRILGIQVHPDR 155
PP P ++A P T SR+R + L +S +R+LG HP R
Sbjct: 70 PPLPTAAAY---TPPHTNTPSSRRRHHAPLVRSGLRLLGSSRHPRR 112
>04_01_0289 +
3830052-3831134,3831141-3831230,3831494-3831525,
3833690-3834623
Length = 712
Score = 28.3 bits (60), Expect = 8.8
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +1
Query: 217 NVDDFPLCVHLVSDEYEQLSSEALEAGR-ICC 309
NV++ P + L+ DE +++ E L AGR I C
Sbjct: 679 NVEEIPTSMDLMKDENDKIQLEILTAGRNIAC 710
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,846,114
Number of Sequences: 37544
Number of extensions: 428658
Number of successful extensions: 1054
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1015
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1047
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2530383840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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