Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_G19
         (896 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47652| Best HMM Match : Ribosomal_L10e (HMM E-Value=0.0041)         81   9e-16
SB_33920| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.3  
SB_45389| Best HMM Match : Peptidase_M13 (HMM E-Value=4.1e-09)         31   1.7  
SB_7933| Best HMM Match : GCC2_GCC3 (HMM E-Value=1.4e-18)              30   2.2  
SB_40980| Best HMM Match : ANF_receptor (HMM E-Value=0.00014)          29   5.1  
SB_5146| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.1  
SB_10713| Best HMM Match : Peptidase_C32 (HMM E-Value=3.3)             29   6.7  

>SB_47652| Best HMM Match : Ribosomal_L10e (HMM E-Value=0.0041)
          Length = 50

 Score = 81.4 bits (192), Expect = 9e-16
 Identities = 39/49 (79%), Positives = 42/49 (85%)
 Frame = +1

Query: 436 MRGAFGKPQGTVARVRIGQPIMSVRSXDRWKAQVIEALRRAKFKFPGRQ 582
           MRGAFGKPQGTVARV IGQ I+S+R+ D  KA  IEALRRAKFKFPGRQ
Sbjct: 1   MRGAFGKPQGTVARVNIGQTIISIRTKDGNKAAAIEALRRAKFKFPGRQ 49


>SB_33920| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1278

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
 Frame = -3

Query: 594 YVDXLTSGELELGTAQSLDDLCLPPVXRAHGHDGLSNANT--CYSTLRLAKRTT 439
           Y +  ++G   + T     D+C+P   + HGH    +ANT  CY  +  A  +T
Sbjct: 68  YAESCSAGHYVVRTGNPFTDICIP--CQCHGHSDQCDANTGICYVRIYTADLST 119


>SB_45389| Best HMM Match : Peptidase_M13 (HMM E-Value=4.1e-09)
          Length = 177

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 17/40 (42%), Positives = 22/40 (55%)
 Frame = +1

Query: 286 LEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLS 405
           L    I C  Y  KN  +D   +RM +HP H IRIN ++S
Sbjct: 115 LSYAHIFCGSYS-KNAAEDI--VRMSVHPLHPIRINGVVS 151


>SB_7933| Best HMM Match : GCC2_GCC3 (HMM E-Value=1.4e-18)
          Length = 1023

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 21/73 (28%), Positives = 26/73 (35%)
 Frame = -2

Query: 487 QCEHVLQYPEACQTHHASQSGAYQLQRTITFY*CG*RGKGEVSCGYGTDPFRSSLRGTYC 308
           +C  V Q P AC   + S  GA +       Y C    K  V CG G          T C
Sbjct: 535 KCPDVTQAPVACTNGYYSGDGATECTLCPAGYSCADATKSPVPCGKGYYSTNGQTSCTEC 594

Query: 307 SRYVLPPKPLSSA 269
           S     P  L ++
Sbjct: 595 SAGFYCPVELGTS 607


>SB_40980| Best HMM Match : ANF_receptor (HMM E-Value=0.00014)
          Length = 735

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 22/72 (30%), Positives = 29/72 (40%)
 Frame = -2

Query: 340 PFRSSLRGTYCSRYVLPPKPLSSAVHIRRTPSARTVESRQRSLSFLPKSKIRILGIQVHP 161
           PF SS   T      L    L+  + + +TP   T+ S+    SF       I G  +H 
Sbjct: 331 PFNSSFYLTDSVGVTLYANALNKTLALNQTPDGSTIFSKINDTSF-----YSIQGYDIHI 385

Query: 160 DRTFDFGYGLFL 125
           DR  D  Y L L
Sbjct: 386 DRNGDAEYNLTL 397


>SB_5146| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2077

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 12/55 (21%), Positives = 26/55 (47%)
 Frame = +1

Query: 442  GAFGKPQGTVARVRIGQPIMSVRSXDRWKAQVIEALRRAKFKFPGRQXIYVSKKW 606
            G  G+P G+V  +      +++++  +W   + E++  A + FP       S+ W
Sbjct: 1109 GVDGRPSGSVEILGSRDSFVAIQNGRQWMLDIEESISIAFYVFPNNSLGNTSRNW 1163


>SB_10713| Best HMM Match : Peptidase_C32 (HMM E-Value=3.3)
          Length = 615

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 11/29 (37%), Positives = 21/29 (72%), Gaps = 2/29 (6%)
 Frame = +3

Query: 333 RKGSVPYPHET--SPFPRYPHQ*NVIVRW 413
           +KGS+ +PH +  S +P+YP   +++VR+
Sbjct: 101 KKGSIRFPHSSASSDYPQYPEGRDLVVRF 129


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,626,764
Number of Sequences: 59808
Number of extensions: 481763
Number of successful extensions: 1261
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1260
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2574115416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)