Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_G19
         (896 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48334-1|CAA88308.1|  214|Caenorhabditis elegans Hypothetical pr...   236   2e-62
AF098986-1|AAC67425.1|  747|Caenorhabditis elegans T box family ...    30   2.0  
AF039053-3|AAC25880.2|  349|Caenorhabditis elegans Hypothetical ...    29   3.4  
Z46791-1|CAA86761.1|  476|Caenorhabditis elegans Hypothetical pr...    28   7.9  

>Z48334-1|CAA88308.1|  214|Caenorhabditis elegans Hypothetical
           protein F10B5.1 protein.
          Length = 214

 Score =  236 bits (577), Expect = 2e-62
 Identities = 110/169 (65%), Positives = 132/169 (78%)
 Frame = +1

Query: 151 RFCRGVPESQESVSSIWVRKRANVDDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVKN 330
           RFCRGVP+++  +  +   KRANVD FP CVH++S+E E LSSEALEA RIC NKY+VKN
Sbjct: 21  RFCRGVPDAKIRIFDLG-NKRANVDTFPACVHMMSNEREHLSSEALEAARICANKYMVKN 79

Query: 331 CGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVR 510
           CGKD FH+R+R HPFHV RINKMLSCAGADRLQTGMRGA+GKPQG VARV IG  + S+R
Sbjct: 80  CGKDGFHLRVRKHPFHVTRINKMLSCAGADRLQTGMRGAYGKPQGLVARVDIGDILFSMR 139

Query: 511 SXDRWKAQVIEALRRAKFKFPGRQXIYVSKKWGFTKYERDXFEXLX*KG 657
             +      IEA RRAKFKFPGRQ I  S+KWGFTK++R+ +E +  +G
Sbjct: 140 IKEGNVKHAIEAFRRAKFKFPGRQIIVSSRKWGFTKWDREDYERMRAEG 188



 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 26/43 (60%), Positives = 30/43 (69%)
 Frame = +3

Query: 87  MGRRPSEECYRYCKNKPYPKSKVLSGCT*IPRIRIFDLGKKES 215
           MGRRP+  CYRY KNKPYPKS+   G     +IRIFDLG K +
Sbjct: 1   MGRRPAR-CYRYIKNKPYPKSRFCRGVP-DAKIRIFDLGNKRA 41


>AF098986-1|AAC67425.1|  747|Caenorhabditis elegans T box family
           protein 31 protein.
          Length = 747

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 12/34 (35%), Positives = 24/34 (70%), Gaps = 2/34 (5%)
 Frame = +1

Query: 166 VPESQESVSSIWVRK--RANVDDFPLCVHLVSDE 261
           +PE+QE+++ IWV+K    NV+ +P+ ++ +  E
Sbjct: 652 IPETQENITIIWVKKDFPENVNKYPVAINSLITE 685


>AF039053-3|AAC25880.2|  349|Caenorhabditis elegans Hypothetical
           protein C45H4.13 protein.
          Length = 349

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
 Frame = -1

Query: 332 QFFTRYLLQQIRPA--SKASELSCSYSSDTKCTHSGKSSTFALFLTQIEDTDSWDSGTP 162
           +FF  +L Q+IR A  S  S  S S SS +    S  SS+++ +   I     + S +P
Sbjct: 214 EFFRYFLTQRIRHARDSSGSHESYSGSSSSSSYSSSDSSSYSSYTPSISSNSDYTSYSP 272


>Z46791-1|CAA86761.1|  476|Caenorhabditis elegans Hypothetical
           protein C09G5.2 protein.
          Length = 476

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -1

Query: 458 GLPNAPRIPVWSLSAPA 408
           G PN+P +P+W LS P+
Sbjct: 232 GFPNSPLLPIWLLSYPS 248


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,052,055
Number of Sequences: 27780
Number of extensions: 351097
Number of successful extensions: 812
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 810
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2276333906
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)