Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_G17
         (887 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    29   0.88 
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    29   1.2  
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos...    27   2.7  
SPAC6B12.10c |spp1|pri1|DNA primase catalytic subunit Spp1 |Schi...    27   3.6  
SPCC18.18c |fum1|SPCC290.01c|fumarate hydratase|Schizosaccharomy...    26   6.2  
SPAC1851.02 |||1-acylglycerol-3-phosphate O-acyltransferase|Schi...    26   6.2  
SPAC10F6.14c |||ABC1 kinase family protein|Schizosaccharomyces p...    26   8.2  
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    26   8.2  

>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 583

 Score = 29.1 bits (62), Expect = 0.88
 Identities = 11/25 (44%), Positives = 19/25 (76%)
 Frame = -1

Query: 449 VNSSTNCPPVCRSEGLALSTSPSLP 375
           + SS N  P+CR++G+A +++PS P
Sbjct: 557 LTSSQNSCPLCRTKGVASASTPSSP 581


>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -3

Query: 222 DPRAQHHCHHEHNQPCAAEHAHYYDRFQLLNSRSMHE 112
           D  +QH   HE++Q    EH H +D     N +  HE
Sbjct: 525 DHVSQHEHTHENSQEHHHEHNHNHDHIHKYNEKCDHE 561


>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1649

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +2

Query: 578 LIPTLFTKKIRMKSLKWKLKLYSIQQY 658
           L+   FT+K  +K L+W ++ +SI +Y
Sbjct: 100 LLAPFFTEKNALKVLEWLIRRFSIHEY 126


>SPAC6B12.10c |spp1|pri1|DNA primase catalytic subunit Spp1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 454

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 13/54 (24%), Positives = 26/54 (48%)
 Frame = +1

Query: 436 VEELTREIDQRQQRQSTAPPFLLQSIEENKKKSRNLYNPTANGRQSDTNPNFIY 597
           V +L +E+D+  Q  +   P +  +  EN+K +    +   +G  +  NP  +Y
Sbjct: 377 VNDLLQELDKNSQNDNGHGPTMETNTTENQKDNARGQSNKGHGFSTSLNPYTLY 430


>SPCC18.18c |fum1|SPCC290.01c|fumarate hydratase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 482

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 9/44 (20%), Positives = 19/44 (43%)
 Frame = -1

Query: 269 IRPVACMSSTLRLMEATLAHSTTAITNTTSHAQLNTLTIMIVSN 138
           + P  C + T+   +    H+T  +   + H +LN    ++  N
Sbjct: 342 VNPTQCEALTMVCAQVMGNHATITVAGASGHCELNVFKPLLAKN 385


>SPAC1851.02 |||1-acylglycerol-3-phosphate
           O-acyltransferase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 279

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -3

Query: 429 PTRLPLRRSGAFHVAIAAHVHGVP 358
           P  LPL++ GAFH+A+ A V  +P
Sbjct: 190 PCLLPLKK-GAFHLAVQAQVPIIP 212


>SPAC10F6.14c |||ABC1 kinase family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 535

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = -3

Query: 399 AFHVAIAAHVHGVPSPGQLLIR-DQARVVECVVL 301
           AF +  +  VH  P PG +L+R +QA + + V+L
Sbjct: 331 AFQMFHSKQVHCDPHPGNILVRKNQAGLCQTVIL 364


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1562

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 10/45 (22%), Positives = 24/45 (53%)
 Frame = +1

Query: 397  SARPSERQTGGQFVEELTREIDQRQQRQSTAPPFLLQSIEENKKK 531
            ++RPS  +    ++  +T  +D+R+++     P    SI E +++
Sbjct: 919  ASRPSLSRRRNDYINNVTSWLDERREKMGVVRPRASTSILETRRR 963


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,507,654
Number of Sequences: 5004
Number of extensions: 74990
Number of successful extensions: 231
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 229
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)