Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP10_F_G17
(887 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L09634-1|AAA27967.1| 776|Caenorhabditis elegans Hypothetical pr... 30 2.5
AF025464-2|AAN84804.1| 496|Caenorhabditis elegans Prion-like-(q... 30 2.5
AF025464-1|AAN84805.1| 529|Caenorhabditis elegans Prion-like-(q... 30 2.5
Z83117-1|CAB05569.1| 220|Caenorhabditis elegans Hypothetical pr... 29 3.4
AL023839-1|CAA19507.1| 117|Caenorhabditis elegans Hypothetical ... 29 4.4
AF025467-5|AAB71038.2| 1115|Caenorhabditis elegans Hypothetical ... 29 4.4
AF025467-4|AAN65300.1| 1130|Caenorhabditis elegans Hypothetical ... 29 4.4
U40799-9|AAA81488.2| 1292|Caenorhabditis elegans Hypothetical pr... 29 5.9
U97194-8|AAB52447.3| 1254|Caenorhabditis elegans Prion-like-(q/n... 28 7.8
>L09634-1|AAA27967.1| 776|Caenorhabditis elegans Hypothetical
protein C30C11.4 protein.
Length = 776
Score = 29.9 bits (64), Expect = 2.5
Identities = 24/119 (20%), Positives = 51/119 (42%), Gaps = 7/119 (5%)
Frame = +1
Query: 235 RRVDDMQATGRMRVQKLKMNSDKNHAFHNPGLVPDEELSR--RGYSMYVGSDGDVESARP 408
+R+ +++A G V++ + + + AF + D+ + R + Y Y
Sbjct: 632 KRLSELKAVGTPVVERYRESETRKPAFDSF----DQSIMRVRKAYEDYANGGPTYAHLDS 687
Query: 409 SERQTGGQFVEELTREIDQRQQRQST-----APPFLLQSIEENKKKSRNLYNPTANGRQ 570
E + +E+ + +D+ + +Q T AP + I +NK N+ NP N ++
Sbjct: 688 KEMEKVINAIEDKKKWLDEARHKQETRSKTDAPVVFTEEILQNKNVFENVVNPILNKKK 746
>AF025464-2|AAN84804.1| 496|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 42,
isoform a protein.
Length = 496
Score = 29.9 bits (64), Expect = 2.5
Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +1
Query: 187 VFVMAVVLCARVASIRRRVDDMQATGRMRVQKLKMNSDKNHAF-HNPGLVPDEELSRRG 360
+FV A + CA + RR++D+ A+ R+ + + + NH P+ ++ R G
Sbjct: 43 LFVFAPLQCANCYNFLRRLNDLAASRAYRIHVVAPDFESNHIIQRTSSAFPNLQIDRAG 101
>AF025464-1|AAN84805.1| 529|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 42,
isoform b protein.
Length = 529
Score = 29.9 bits (64), Expect = 2.5
Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +1
Query: 187 VFVMAVVLCARVASIRRRVDDMQATGRMRVQKLKMNSDKNHAF-HNPGLVPDEELSRRG 360
+FV A + CA + RR++D+ A+ R+ + + + NH P+ ++ R G
Sbjct: 65 LFVFAPLQCANCYNFLRRLNDLAASRAYRIHVVAPDFESNHIIQRTSSAFPNLQIDRAG 123
>Z83117-1|CAB05569.1| 220|Caenorhabditis elegans Hypothetical
protein M04C7.3 protein.
Length = 220
Score = 29.5 bits (63), Expect = 3.4
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Frame = -2
Query: 373 RTWSTLAWTTPHQGPGPGCGMRGSYLNSF--SVFEPSSVRWPACRLLS 236
+TW + T P+ G G G G N+F SV S R P C + S
Sbjct: 18 KTWKSSRTTRPNSGSGRGIHGEGRGTNAFDVSVSSSSVTRVPGCAVKS 65
>AL023839-1|CAA19507.1| 117|Caenorhabditis elegans Hypothetical
protein Y39A1C.1 protein.
Length = 117
Score = 29.1 bits (62), Expect = 4.4
Identities = 18/53 (33%), Positives = 22/53 (41%)
Frame = +3
Query: 105 RLIHASTWSSGVGNDHNSERVQLRMAGCVRDGSGAVREGRLHQAESRRHAGHR 263
R + ST +S N HN ER Q + + G G G S RH G R
Sbjct: 64 RKLRKSTKNSAEANAHNDERAQAIVMNSMPSGGG----GGAPSTSSSRHTGSR 112
>AF025467-5|AAB71038.2| 1115|Caenorhabditis elegans Hypothetical
protein R148.3a protein.
Length = 1115
Score = 29.1 bits (62), Expect = 4.4
Identities = 12/48 (25%), Positives = 27/48 (56%)
Frame = +1
Query: 394 ESARPSERQTGGQFVEELTREIDQRQQRQSTAPPFLLQSIEENKKKSR 537
E +P++ + + +E L +E ++R + + PP +LQS+ E + +
Sbjct: 222 EPVKPADLEMDAE-IERLIKEEEERMKNVAEQPPLVLQSLPETPEAQK 268
>AF025467-4|AAN65300.1| 1130|Caenorhabditis elegans Hypothetical
protein R148.3b protein.
Length = 1130
Score = 29.1 bits (62), Expect = 4.4
Identities = 12/48 (25%), Positives = 27/48 (56%)
Frame = +1
Query: 394 ESARPSERQTGGQFVEELTREIDQRQQRQSTAPPFLLQSIEENKKKSR 537
E +P++ + + +E L +E ++R + + PP +LQS+ E + +
Sbjct: 222 EPVKPADLEMDAE-IERLIKEEEERMKNVAEQPPLVLQSLPETPEAQK 268
>U40799-9|AAA81488.2| 1292|Caenorhabditis elegans Hypothetical protein
F42C5.10 protein.
Length = 1292
Score = 28.7 bits (61), Expect = 5.9
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -3
Query: 210 QHHCHHEHNQPCAAEHAHYYDRFQLLNSRSMHE 112
QHH HH H +EH H+Y + + + S E
Sbjct: 946 QHH-HHHHYHTDGSEHVHHYHQDENAHQHSTAE 977
>U97194-8|AAB52447.3| 1254|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 20
protein.
Length = 1254
Score = 28.3 bits (60), Expect = 7.8
Identities = 14/54 (25%), Positives = 23/54 (42%)
Frame = -3
Query: 270 HPSGGLHVVYSPPDGGDPRAQHHCHHEHNQPCAAEHAHYYDRFQLLNSRSMHEL 109
HP G H+ P QHH +H++ H+ + QL + MH++
Sbjct: 1160 HPGAGGHLQLHPQMHMQMLPQHHQQQQHHEEMMM--MHHQQQQQLQQQQQMHQM 1211
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,631,195
Number of Sequences: 27780
Number of extensions: 441617
Number of successful extensions: 1606
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1591
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2244863852
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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