Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_G16
         (849 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC330.06c |||thioredoxin peroxidase|Schizosaccharomyces pombe|...    66   4e-12
SPBC244.01c |sid4||SIN component scaffold protein Sid4 |Schizosa...    28   1.9  
SPBC1773.02c |||thioredoxin peroxidase|Schizosaccharomyces pombe...    27   2.5  
SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase [UDP-...    27   3.4  
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo...    26   7.8  
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc...    26   7.8  

>SPCC330.06c |||thioredoxin peroxidase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 156

 Score = 66.5 bits (155), Expect = 4e-12
 Identities = 38/99 (38%), Positives = 55/99 (55%), Gaps = 3/99 (3%)
 Frame = +1

Query: 214 VPGAFTPGCSKTHLPGYVQNADKLKSDGVAEIVCVSVNDPYVMAAWGAQHN--TXGKVRM 387
           VPGAFTP CS + +PGY+ N  +  + G++ I  V+VND +V  AW    +      V  
Sbjct: 35  VPGAFTPPCS-SQVPGYIANEKQFAAKGISGIYVVAVNDVFVTKAWKKSFDGGEQSGVHF 93

Query: 388 LADPSGNFIKALDLGTNLPP-LGGXRSKXFSMVIVDSXV 501
           +AD +G F KA D G +    LG  RSK ++ V+ +  V
Sbjct: 94  VADWNGEFTKAFDAGFDASGLLGPLRSKRYAAVVENGKV 132


>SPBC244.01c |sid4||SIN component scaffold protein Sid4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 660

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 24/77 (31%), Positives = 31/77 (40%), Gaps = 8/77 (10%)
 Frame = -1

Query: 321 RHAHYFSNSIRFQFICVLYVSRQVCFRTSRGEGARHPQIIQPSFPPSTHKYSPY------ 160
           RH     NS +  +    Y  + V  +      ARH     PSFPPS    S Y      
Sbjct: 120 RHHEPSFNSEKASYTSTPY--KNVAPKVIDSPSARHMHSNSPSFPPSQSHTSSYDQSPKG 177

Query: 159 -*RENLRI-NQQQAADP 115
             R+N+ + NQQ   DP
Sbjct: 178 QLRDNISVPNQQDGLDP 194


>SPBC1773.02c |||thioredoxin peroxidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 195

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +3

Query: 105 IKVGDQLPAADLFEDSPANKVNICELTAGKKVVLFAGAGRLHPG 236
           I+VGD +P   L  D     + + ++TA K +V+FA      PG
Sbjct: 46  IQVGDVIPDITL-PDEDGTSIRLRDITANKGLVIFAYPKASTPG 88


>SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase
           [UDP-forming]|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -1

Query: 312 HYFSNSIRFQFICVLYVSRQVCFRTSRGEG 223
           H+   S+RF+ +  LY    VC  TS  +G
Sbjct: 365 HFLHKSVRFEELVALYNVSDVCLITSTRDG 394


>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1513

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = +2

Query: 191  KEGCIICGCRAPSPRDVLK-HTCRDTYRTQ 277
            K+GCI C CR P    +++   C + Y  +
Sbjct: 1093 KKGCIFCFCRLPESGVMIECEICHEWYHAK 1122


>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1284

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 8/24 (33%), Positives = 17/24 (70%)
 Frame = -1

Query: 300 NSIRFQFICVLYVSRQVCFRTSRG 229
           NSI+  F+C++Y+S+ + ++   G
Sbjct: 522 NSIKSPFLCLIYISKDMEYKLLHG 545


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,392,040
Number of Sequences: 5004
Number of extensions: 43787
Number of successful extensions: 88
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)