Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_G16
         (849 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0234 - 27739272-27739525,27739810-27739889,27740894-27741048     91   1e-18
01_01_1148 - 9113728-9113835,9113952-9114035,9114831-9114992,911...    83   4e-16
06_03_0811 + 24830496-24831194                                         81   1e-15
02_01_0691 - 5167260-5167937                                           76   4e-14
01_06_0928 + 33085403-33089224                                         29   6.2  

>01_06_0234 - 27739272-27739525,27739810-27739889,27740894-27741048
          Length = 162

 Score = 91.1 bits (216), Expect = 1e-18
 Identities = 43/91 (47%), Positives = 60/91 (65%), Gaps = 1/91 (1%)
 Frame = +1

Query: 214 VPGAFTPGCSKTHLPGYVQNADKLKSDGVAEIVCVSVNDPYVMAAWGAQHNTXGKVRMLA 393
           VPGAFTP CS  H+PG++  A++LK+ GV +I+ VSVNDP+VM AW   +     V+ LA
Sbjct: 43  VPGAFTPTCSNQHVPGFINQAEQLKAKGVDDILLVSVNDPFVMKAWAKSYPENKHVKFLA 102

Query: 394 DPSGNFIKALDLGTNLPPLG-GXRSKXFSMV 483
           D  G + KAL L  +L   G G RS+ F+++
Sbjct: 103 DGLGTYTKALGLELDLSEKGLGIRSRRFALL 133



 Score = 37.1 bits (82), Expect = 0.018
 Identities = 22/49 (44%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
 Frame = +3

Query: 96  MAPIKVGDQLPAADL--FE-DSPANKVNICELTAGKKVVLFAGAGRLHP 233
           MAP+ VGD LP   L  F+ +    +V++  L AGKKVVLF   G   P
Sbjct: 1   MAPVAVGDTLPDGQLGWFDGEDKLQQVSVHGLAAGKKVVLFGVPGAFTP 49


>01_01_1148 -
           9113728-9113835,9113952-9114035,9114831-9114992,
           9115120-9115224,9115584-9116216,9117412-9117496,
           9118426-9118520,9119083-9119241,9119968-9119997,
           9120100-9120306
          Length = 555

 Score = 82.6 bits (195), Expect = 4e-16
 Identities = 39/98 (39%), Positives = 56/98 (57%), Gaps = 1/98 (1%)
 Frame = +1

Query: 214 VPGAFTPGCSKTHLPGYVQNADKLKSDGVAEIVCVSVNDPYVMAAWGAQHNTXGKVRMLA 393
           +PGA+T  CS+ H+P Y  N DKLK+ GV  ++CVSVNDPY +  W  +      +    
Sbjct: 78  LPGAYTGVCSQAHVPSYKNNIDKLKAKGVDSVICVSVNDPYALNGWAEKLQAKDAIEFYG 137

Query: 394 DPSGNFIKALDLGTNL-PPLGGXRSKXFSMVIVDSXVQ 504
           D  G+F K+LDL  +L   L G RS  +S  + D  ++
Sbjct: 138 DFDGSFHKSLDLEVDLSAALLGRRSHRWSAFVDDGKIK 175


>06_03_0811 + 24830496-24831194
          Length = 232

 Score = 81.0 bits (191), Expect = 1e-15
 Identities = 39/100 (39%), Positives = 62/100 (62%), Gaps = 3/100 (3%)
 Frame = +1

Query: 214 VPGAFTPGCSKTHLPGYVQNADKLKSDGVAEIVCVSVNDPYVMAAWGAQHNTXGKVRMLA 393
           VPGAFTP C++ H+PG+V  A +L++ GV  + CVSVND +VM AW        +V +L+
Sbjct: 111 VPGAFTPTCTQKHVPGFVAKAGELRAKGVDAVACVSVNDAFVMRAWKESLGVGDEVLLLS 170

Query: 394 DPSGNFIKALDLGTNL--PPLG-GXRSKXFSMVIVDSXVQ 504
           D +G   +A+ +  +L   P G G RS+ ++++  D  V+
Sbjct: 171 DGNGELARAMGVELDLSDKPAGLGVRSRRYALLAEDGVVK 210



 Score = 46.0 bits (104), Expect = 4e-05
 Identities = 32/70 (45%), Positives = 40/70 (57%), Gaps = 4/70 (5%)
 Frame = +3

Query: 36  LRF*FTNRASARALHISQLSMAPIKVGDQLPAADL-FEDSPANK---VNICELTAGKKVV 203
           LR    + A  RA+  S  + A I VGD+LP A L + DSP  +   V + +LTAGKKVV
Sbjct: 48  LRAGILSAAPRRAVSASAPAAATIAVGDKLPDATLSYFDSPDGELKTVTVRDLTAGKKVV 107

Query: 204 LFAGAGRLHP 233
           LFA  G   P
Sbjct: 108 LFAVPGAFTP 117


>02_01_0691 - 5167260-5167937
          Length = 225

 Score = 75.8 bits (178), Expect = 4e-14
 Identities = 41/101 (40%), Positives = 61/101 (60%), Gaps = 4/101 (3%)
 Frame = +1

Query: 214 VPGAFTPGCSKTHLPGYVQNADKLKSDGVAEIVCVSVNDPYVMAAWGAQHNT-XGKVRML 390
           VPGAFTP CS+ HLPG+++ A +L + GV  I CVSVND +VM AW          V +L
Sbjct: 103 VPGAFTPTCSQKHLPGFIEKAGELHAKGVDAIACVSVNDAFVMRAWKESLGLGDADVLLL 162

Query: 391 ADPSGNFIKALDLGTNL--PPLG-GXRSKXFSMVIVDSXVQ 504
           +D +    +AL +  +L   P+G G RS+ ++++  D  V+
Sbjct: 163 SDGNLELTRALGVEMDLSDKPMGLGVRSRRYALLADDGVVK 203



 Score = 43.2 bits (97), Expect = 3e-04
 Identities = 27/63 (42%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
 Frame = +3

Query: 57  RASARALHISQLSMAPIKVGDQLPAADLFEDSPAN----KVNICELTAGKKVVLFAGAGR 224
           RA+ R+   +   +A I VGD+LP A L    PA+     V + ELTAG+K VLFA  G 
Sbjct: 47  RAARRSAASASTVVATIAVGDKLPDATLSYFDPADGELKTVTVAELTAGRKAVLFAVPGA 106

Query: 225 LHP 233
             P
Sbjct: 107 FTP 109


>01_06_0928 + 33085403-33089224
          Length = 1273

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 21/54 (38%), Positives = 28/54 (51%)
 Frame = -2

Query: 449  SGGRLVPRSRALMKLPLGSASIRTFPLVLC*APQAAITYGSLTDTHTISATPSD 288
            SG  LVP S  L +L L S SI    L LC     ++   SLT+  T++  PS+
Sbjct: 931  SGLPLVPPS-GLCELYLSSCSITDGALALCIGGLTSLRELSLTNIMTLTTLPSE 983


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,182,068
Number of Sequences: 37544
Number of extensions: 358748
Number of successful extensions: 742
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 739
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2362209084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)