Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_G15
         (1029 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    33   0.086
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    27   0.40 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   1.4  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   1.4  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   3.2  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    27   4.3  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   5.7  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 32.7 bits (71), Expect = 0.086
 Identities = 34/125 (27%), Positives = 38/125 (30%), Gaps = 5/125 (4%)
 Frame = +3

Query: 336  PXXVPXP-PXXPXSTEPPPSXXHXSSXXXXGXXDPXXKX*QXP--PXPXGXXVIGSXRG- 503
            P  VP   P  P  T  PP     S         P     + P  P P G   + +  G 
Sbjct: 1033 PIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSS-EIPSIPAPSGAPPVPAPSGI 1091

Query: 504  PPPPXMAXXHPXXPXXMXGSPXNPXPXXXPXKP-GGTXRPXTPXXXXARDXPXXFXPXXG 680
            PP P  +   P  P      P  P P   P  P      P  P    A   P    P   
Sbjct: 1092 PPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVP---KPSVA 1148

Query: 681  APPPP 695
            APP P
Sbjct: 1149 APPVP 1153



 Score = 29.9 bits (64), Expect = 0.61
 Identities = 24/81 (29%), Positives = 26/81 (32%), Gaps = 3/81 (3%)
 Frame = +3

Query: 462  PXPXGXXVIG--SXRGPPPPXMAXXHPXXPXXMXGSPXNPXPXXXPXKP-GGTXRPXTPX 632
            P P G   +   S   PP P  +   P  P    G P  P P   P  P      P  P 
Sbjct: 1153 PAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPP 1212

Query: 633  XXXARDXPXXFXPXXGAPPPP 695
               A   P    P  G PP P
Sbjct: 1213 PSTAPPVP---TPSAGLPPVP 1230



 Score = 28.7 bits (61), Expect = 1.4
 Identities = 14/44 (31%), Positives = 17/44 (38%)
 Frame = +3

Query: 498  RGPPPPXMAXXHPXXPXXMXGSPXNPXPXXXPXKPGGTXRPXTP 629
            R PP P ++   P  P     +P  P P   P  P  T  P  P
Sbjct: 1010 RVPPVPKLSSKAPPVPLPSADAPPIPVPSTAPPVPIPTSTPPVP 1053



 Score = 28.3 bits (60), Expect = 1.9
 Identities = 14/44 (31%), Positives = 16/44 (36%)
 Frame = +2

Query: 461  PPPXGPXXXWLXPGXPPPPXGXLXPXGPXXNGGVPXXPXPPXXA 592
            PP   P       G PP P     P  P  + G+P  P P   A
Sbjct: 1193 PPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKA 1236



 Score = 26.2 bits (55), Expect = 7.5
 Identities = 23/86 (26%), Positives = 23/86 (26%), Gaps = 10/86 (11%)
 Frame = +1

Query: 496  SGXPPPPXWLXXTPGXXXXWXGPXXTXXPXXXPXNPGXXXAXQP--------PGXXGPGT 651
            SG PP P      P        P         P  P       P        P    P  
Sbjct: 1137 SGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSE 1196

Query: 652  XPXXXXPXXGPPP--PPXXKPPXXTP 723
             P    P  G PP  PP   PP  TP
Sbjct: 1197 APPVPKPSVGVPPVPPPSTAPPVPTP 1222


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 27.5 bits (58), Expect(2) = 0.40
 Identities = 12/26 (46%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
 Frame = +1

Query: 622 QPPGXXGPGT-XPXXXXPXXGPPPPP 696
           QPP    P T  P    P   PPPPP
Sbjct: 172 QPPSAAAPATSLPSDYNPPPPPPPPP 197



 Score = 21.4 bits (43), Expect(2) = 0.40
 Identities = 8/22 (36%), Positives = 9/22 (40%)
 Frame = +1

Query: 670 PXXGPPPPPXXKPPXXTPXKSP 735
           P   PPPPP   P      + P
Sbjct: 236 PAPPPPPPPTLPPQSTNTSQLP 257


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 12/27 (44%), Positives = 12/27 (44%)
 Frame = +1

Query: 616 AXQPPGXXGPGTXPXXXXPXXGPPPPP 696
           A  PPG   P   P    P   PPPPP
Sbjct: 2   ASLPPGNPPPPPPPPGFEPPSQPPPPP 28



 Score = 27.1 bits (57), Expect = 4.3
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +1

Query: 682 PPPPPXXKPPXXTPXKSPRXXLXLRR 759
           PPPPP  +PP   P   P   +  R+
Sbjct: 12  PPPPPGFEPPSQPPPPPPPGYVKKRK 37


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 23/74 (31%), Positives = 24/74 (32%)
 Frame = +1

Query: 487 LAXSGXPPPPXWLXXTPGXXXXWXGPXXTXXPXXXPXNPGXXXAXQPPGXXGPGTXPXXX 666
           L  S  PPPP  +  TP        P     P   P   G      PPG  G G      
Sbjct: 728 LLKSPPPPPPAVIVPTPA-------PAPIPVPPPAPIMGGPPPPPPPPGVAGAG------ 774

Query: 667 XPXXGPPPPPXXKP 708
                PPPPP   P
Sbjct: 775 -----PPPPPPPPP 783



 Score = 23.4 bits (48), Expect(2) = 1.9
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = +3

Query: 336 PXXVPXPPXXPXSTEPPP 389
           P  +P PP  P    PPP
Sbjct: 746 PAPIPVPPPAPIMGGPPP 763



 Score = 23.0 bits (47), Expect(2) = 1.9
 Identities = 9/19 (47%), Positives = 9/19 (47%)
 Frame = +3

Query: 459 PPXPXGXXVIGSXRGPPPP 515
           PP P G    G    PPPP
Sbjct: 764 PPPPPGVAGAGPPPPPPPP 782


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 15/48 (31%), Positives = 18/48 (37%)
 Frame = +3

Query: 459 PPXPXGXXVIGSXRGPPPPXMAXXHPXXPXXMXGSPXNPXPXXXPXKP 602
           PP       +G+   PP P  A   P  P  M  +P  P P   P  P
Sbjct: 432 PPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAP--PLPPAAPAPP 477



 Score = 27.1 bits (57), Expect = 4.3
 Identities = 18/67 (26%), Positives = 19/67 (28%), Gaps = 3/67 (4%)
 Frame = +1

Query: 505 PPPPXWLXXTPGXXXXWXGPXXTXXPXXXPX---NPGXXXAXQPPGXXGPGTXPXXXXPX 675
           PPPP       G      G   +  P   P    N        P G   P   P    P 
Sbjct: 312 PPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPS 371

Query: 676 XGPPPPP 696
            G  PPP
Sbjct: 372 TGRQPPP 378



 Score = 26.6 bits (56), Expect = 5.7
 Identities = 21/79 (26%), Positives = 24/79 (30%), Gaps = 3/79 (3%)
 Frame = +1

Query: 496 SGXPPPPXWLXXTPGXXXXWXGPXX--TXXPXXXPXNPGXXXAXQPP-GXXGPGTXPXXX 666
           S  PPPP     + G            +  P   P  PG      PP G     + P   
Sbjct: 359 SAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVP 418

Query: 667 XPXXGPPPPPXXKPPXXTP 723
            P   PP  P   PP   P
Sbjct: 419 TPPSLPPSAPPSLPPSAPP 437


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 23/65 (35%), Positives = 23/65 (35%), Gaps = 1/65 (1%)
 Frame = -1

Query: 651 GPGPXXPXGLXGXXXPRVSXAXXGGXGXXGTPPXXXGPXGXXQPXGG-GGXPGXSQXXXG 475
           GP P  P G  G           GG G  G      GP G     GG GG PG      G
Sbjct: 199 GP-PPGPGGFGGFGGFGGEGHHHGGHGGFG-----GGPGGFEGGPGGFGGGPGGFGGGLG 252

Query: 474 PXGGG 460
             GGG
Sbjct: 253 GFGGG 257



 Score = 26.6 bits (56), Expect = 5.7
 Identities = 23/71 (32%), Positives = 23/71 (32%), Gaps = 1/71 (1%)
 Frame = -2

Query: 707 GXXXGGGGGPXXGXKXXGXVPGPXXPGGXXAXXXPGFXGXXXGXXVXXGPXHXXXXPGVX 528
           G   GG GGP  G    G   G    G        GF G   G     GP      PG  
Sbjct: 191 GGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHG-GFGGGPGG--FEGGPGGFGGGPGGF 247

Query: 527 XSHXGG-GGXP 498
               GG GG P
Sbjct: 248 GGGLGGFGGGP 258


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 14/42 (33%), Positives = 14/42 (33%), Gaps = 1/42 (2%)
 Frame = +2

Query: 497  PGXPPPPXGXLXPXG-PXXNGGVPXXPXPPXXAXETRGXXXP 619
            P  PPPP     P   P    G P  P PP  A        P
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPNP 1746



 Score = 26.2 bits (55), Expect = 7.5
 Identities = 18/64 (28%), Positives = 21/64 (32%), Gaps = 1/64 (1%)
 Frame = +3

Query: 357  PXXPXSTEPPPSXXHXSSXXXXGXXDPXXKX*QXPPXPXGXXV-IGSXRGPPPPXMAXXH 533
            P  P ST  PP     ++        P       PP P    +  G    PPPP  A   
Sbjct: 1683 PAHPVST--PPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSA 1740

Query: 534  PXXP 545
            P  P
Sbjct: 1741 PSVP 1744


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,994,371
Number of Sequences: 5004
Number of extensions: 23195
Number of successful extensions: 122
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 537243034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)