Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_G11
         (941 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    33   0.077
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   0.72 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    23   8.4  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 32.7 bits (71), Expect = 0.077
 Identities = 11/17 (64%), Positives = 11/17 (64%)
 Frame = +3

Query: 696 PPPPPPXXXXXXPPPPP 746
           PPPPPP      PPPPP
Sbjct: 763 PPPPPPGVAGAGPPPPP 779



 Score = 30.3 bits (65), Expect = 0.41
 Identities = 19/64 (29%), Positives = 19/64 (29%)
 Frame = +3

Query: 696 PPPPPPXXXXXXPPPPPXXXXXXXXXXXXXXXXXXXXXXXXPPPPPXXGGXXXXXXXXPX 875
           PPPPPP      P P P                        PPPPP   G        P 
Sbjct: 732 PPPPPPAVIVPTPAPAP------------IPVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779

Query: 876 PPXP 887
           PP P
Sbjct: 780 PPPP 783


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 29.5 bits (63), Expect = 0.72
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = +3

Query: 696 PPPPPPXXXXXXPPPPP 746
           PPPPPP       PPPP
Sbjct: 11  PPPPPPGFEPPSQPPPP 27



 Score = 29.1 bits (62), Expect = 0.95
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = +3

Query: 696 PPPPPPXXXXXXPPPPP 746
           PPPPP       PPPPP
Sbjct: 12  PPPPPGFEPPSQPPPPP 28



 Score = 27.5 bits (58), Expect = 2.9
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = +2

Query: 815 PPPPPPXXGGXXXXXXXXXPPPXPP 889
           PPPPPP  G          PPP PP
Sbjct: 9   PPPPPPPPG---FEPPSQPPPPPPP 30


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 23.0 bits (47), Expect(2) = 8.4
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +3

Query: 702 PPPPXXXXXXPPPPP 746
           P PP      PPPPP
Sbjct: 352 PLPPQGRSAPPPPPP 366



 Score = 21.0 bits (42), Expect(2) = 8.4
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = +3

Query: 696 PPPPPP 713
           PPPPPP
Sbjct: 337 PPPPPP 342


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,453,606
Number of Sequences: 5004
Number of extensions: 18439
Number of successful extensions: 191
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 479324640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)