Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_G10
         (877 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc...    36   0.008
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    31   0.16 
SPAC2H10.02c |||26S proteasome regulator |Schizosaccharomyces po...    29   1.1  
SPAC3G9.14 |sak1||transcriptional repressor Sak1|Schizosaccharom...    27   3.5  
SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyce...    27   3.5  
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz...    27   3.5  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    27   3.5  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    27   4.6  
SPAC227.09 |||folylpolyglutamate synthase|Schizosaccharomyces po...    27   4.6  
SPAC1F3.05 |||adaptin |Schizosaccharomyces pombe|chr 1|||Manual        26   6.1  
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha...    26   6.1  

>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 630

 Score = 35.9 bits (79), Expect = 0.008
 Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 4/81 (4%)
 Frame = +2

Query: 152 PSLEDMKVDNMMRAQISQHQAPPSYVAPQLCATPSAPSATHVYPTLGEYMGMELSQAVIA 331
           PS     V N+ +  + Q+ + P  V+    A+P  P+ATH  P +        + A  A
Sbjct: 324 PSASTSAVTNITKPTLIQNPSTPLSVSNSKVASPETPNATHTAPKVEMRYASAAAAAAAA 383

Query: 332 L--NMP--EYQIQQVQPTSSN 382
           L    P   Y +QQV+P + N
Sbjct: 384 LAKESPSHHYIMQQVRPETPN 404


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 31.5 bits (68), Expect = 0.16
 Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 4/89 (4%)
 Frame = +2

Query: 200 SQHQAPPSYVAPQLCATPSAPSATHVYPTLGEYMGMELSQAVIALNMPEYQIQQVQPTSS 379
           S HQ P + VAP++ + P  P+A  V           +     AL++P+  +  V P   
Sbjct: 528 SVHQPPAAPVAPEVPSAPQRPAAPVVPEAPSVPQRPAVPVVPEALSVPQPPVAPVAPEVP 587

Query: 380 NV----VAPLSSQSLSLPKATVTQAIRQV 454
           +V    VAP+  ++ S+P+  V     +V
Sbjct: 588 SVPQPPVAPVVPEAPSVPQPPVAPVAPEV 616


>SPAC2H10.02c |||26S proteasome regulator |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 213

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +2

Query: 530 VAANSPGALAGLRFGDQILEINNVT 604
           VA  SP   AGL  GD+++ + NVT
Sbjct: 135 VAVESPAQEAGLCIGDELVHVQNVT 159


>SPAC3G9.14 |sak1||transcriptional repressor
           Sak1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 766

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 20/65 (30%), Positives = 30/65 (46%)
 Frame = +2

Query: 209 QAPPSYVAPQLCATPSAPSATHVYPTLGEYMGMELSQAVIALNMPEYQIQQVQPTSSNVV 388
           Q  PS+ APQ    PS  S ++V P L  +  +       +++ P Y  Q +   SS+ V
Sbjct: 263 QLAPSFAAPQAHPLPSHLSQSNVPPQL-SHSSVPSPAPPRSVSQPTYFSQPMPQFSSSFV 321

Query: 389 APLSS 403
              SS
Sbjct: 322 PGTSS 326


>SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 335

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -1

Query: 709 SYISLEWPITNSHGDIICRSFLKDI-MTFIHCHSSNSDIID 590
           +Y++   P TN  GDI   S    I +T IHCHSS   ++D
Sbjct: 136 NYVAYNSP-TNP-GDIYLASLDTAIPVTLIHCHSSAVQVVD 174


>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 547

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 17/60 (28%), Positives = 30/60 (50%)
 Frame = +2

Query: 368 PTSSNVVAPLSSQSLSLPKATVTQAIRQVVLCKDRNGKCGLRLHSVDSGVFVCYVAANSP 547
           P  S  +AP +  SLS P+ T+ Q++  + L    N +  +   +  +G F   V+A+ P
Sbjct: 298 PLQSPPLAPKTGVSLSRPRLTLDQSLGNLSLGSGINQRRQVPRSNSYAGAFPSVVSASLP 357


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 13/48 (27%), Positives = 23/48 (47%)
 Frame = +2

Query: 299  MGMELSQAVIALNMPEYQIQQVQPTSSNVVAPLSSQSLSLPKATVTQA 442
            M   +S A    N P     Q +P ++   AP++S + ++ +AT   A
Sbjct: 1012 MANPVSTAQQTQNRPPAPAMQARPNTTQAAAPVTSTTTTIKQATTVSA 1059


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = +2

Query: 191  AQISQHQAPPSYVAPQLCATPSAPSATHV 277
            A I+Q+   PS +AP + A  SAPSA  V
Sbjct: 1747 APINQNAYVPSNIAPAMGAMQSAPSAEAV 1775


>SPAC227.09 |||folylpolyglutamate synthase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 417

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 9/86 (10%)
 Frame = +2

Query: 158 LEDMKVDNMMRAQISQHQAPPSYVAPQ---------LCATPSAPSATHVYPTLGEYMGME 310
           L ++ V N ++    + +A P Y+A           +  TP+  + T   P  G+Y G  
Sbjct: 181 LNEVNVLNQLKLSAEETRAHPFYLAKGKSGENKNEWIINTPNWGTNTFSTPLKGDYQGQN 240

Query: 311 LSQAVIALNMPEYQIQQVQPTSSNVV 388
           L+ AV AL++       + P   N V
Sbjct: 241 LACAVTALDILSSSFSIMLPHVQNGV 266


>SPAC1F3.05 |||adaptin |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 510

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 22/89 (24%), Positives = 39/89 (43%)
 Frame = +2

Query: 152 PSLEDMKVDNMMRAQISQHQAPPSYVAPQLCATPSAPSATHVYPTLGEYMGMELSQAVIA 331
           PS  D K ++ +   + +    P+  +P L     A  +  +  +L   M    S +  A
Sbjct: 322 PSSNDTKQESSL-IDLMKLTEEPAVPSPSLPTNVPANQSLSMLSSLSNSMS---STSNGA 377

Query: 332 LNMPEYQIQQVQPTSSNVVAPLSSQSLSL 418
           LN P Y    +  T+S++ + L S SL +
Sbjct: 378 LNSPSYSQAAIPNTNSSLTSILQSDSLMI 406


>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
           Upf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 18/78 (23%), Positives = 40/78 (51%)
 Frame = +2

Query: 170 KVDNMMRAQISQHQAPPSYVAPQLCATPSAPSATHVYPTLGEYMGMELSQAVIALNMPEY 349
           ++ + +  ++  H  PPS++ P+L +  S P+   +  +  E +   LS+ +  +  P  
Sbjct: 358 RLSSFLYHKLLGHDIPPSFLKPKLPSDLSVPNLPKLNASQSEAVRAVLSKPLSLIQGPPG 417

Query: 350 QIQQVQPTSSNVVAPLSS 403
             + V  TS++VV  L++
Sbjct: 418 TGKTV--TSASVVYHLAT 433


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,372,871
Number of Sequences: 5004
Number of extensions: 69512
Number of successful extensions: 178
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)