Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_G08
         (854 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK123974-1|BAC85739.1|  322|Homo sapiens protein ( Homo sapiens ...    31   7.1  
BC080610-1|AAH80610.1|  466|Homo sapiens Unknown (protein for IM...    30   9.3  
AY149237-1|AAN41263.1| 1860|Homo sapiens collagen XXVII proalpha...    30   9.3  
AL445543-2|CAI14773.1|  714|Homo sapiens collagen type XXVII alp...    30   9.3  
AL445543-1|CAI14772.1| 1860|Homo sapiens collagen type XXVII alp...    30   9.3  
AL356796-1|CAI16857.1| 1860|Homo sapiens collagen type XXVII alp...    30   9.3  

>AK123974-1|BAC85739.1|  322|Homo sapiens protein ( Homo sapiens
           cDNA FLJ41980 fis, clone SMINT2007391. ).
          Length = 322

 Score = 30.7 bits (66), Expect = 7.1
 Identities = 27/86 (31%), Positives = 35/86 (40%), Gaps = 6/86 (6%)
 Frame = -1

Query: 731 AMXKRHAXPKGERRTGIP*AXRVGNRRAHE----GASRGET--PGIFIVLSGFATSDLSV 570
           A  +R A P G+RR        V +R AH     G   G +  P   +  +G A S   V
Sbjct: 185 AARERGAAPPGDRRVTARPRAAVTSREAHAHKGWGVRGGSSAAPAQLLREAGSAPSGRGV 244

Query: 569 DFCDARQGGGAYGKTPATRPFYGSWP 492
            F   R GG  + +  A  P   SWP
Sbjct: 245 SF-PRRAGGPLFPRAAAEAPPSASWP 269


>BC080610-1|AAH80610.1|  466|Homo sapiens Unknown (protein for
           IMAGE:5480483) protein.
          Length = 466

 Score = 30.3 bits (65), Expect = 9.3
 Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
 Frame = +3

Query: 495 PGTVKRPRCWRFSIGSAPLTSITKIDAQVRGGETR--QDYKDTRRFPPGSSLVRSPVPDP 668
           P    RP     S    P+ ++ + +A++    ++       T + PP ++L  SP P P
Sbjct: 199 PPPSTRPLPPTTSSSKKPIPTLARTEAKITSHASKPASARTSTHKPPPFTALSSSPAPTP 258

Query: 669 XRLRDTCPPFSL 704
              R T PP ++
Sbjct: 259 GSTRSTRPPATM 270


>AY149237-1|AAN41263.1| 1860|Homo sapiens collagen XXVII proalpha 1
           chain precursor protein.
          Length = 1860

 Score = 30.3 bits (65), Expect = 9.3
 Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
 Frame = +3

Query: 495 PGTVKRPRCWRFSIGSAPLTSITKIDAQVRGGETR--QDYKDTRRFPPGSSLVRSPVPDP 668
           P    RP     S    P+ ++ + +A++    ++       T + PP ++L  SP P P
Sbjct: 436 PPPSTRPLPPTTSSSKKPIPTLARTEAKITSHASKPASARTSTHKPPPFTALSSSPAPTP 495

Query: 669 XRLRDTCPPFSL 704
              R T PP ++
Sbjct: 496 GSTRSTRPPATM 507


>AL445543-2|CAI14773.1|  714|Homo sapiens collagen type XXVII alpha
           1 protein.
          Length = 714

 Score = 30.3 bits (65), Expect = 9.3
 Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
 Frame = +3

Query: 495 PGTVKRPRCWRFSIGSAPLTSITKIDAQVRGGETR--QDYKDTRRFPPGSSLVRSPVPDP 668
           P    RP     S    P+ ++ + +A++    ++       T + PP ++L  SP P P
Sbjct: 383 PPPSTRPLPPTTSSSKKPIPTLARTEAKITSHASKPASARTSTHKPPPFTALSSSPAPTP 442

Query: 669 XRLRDTCPPFSL 704
              R T PP ++
Sbjct: 443 GSTRSTRPPATM 454


>AL445543-1|CAI14772.1| 1860|Homo sapiens collagen type XXVII alpha
           1 protein.
          Length = 1860

 Score = 30.3 bits (65), Expect = 9.3
 Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
 Frame = +3

Query: 495 PGTVKRPRCWRFSIGSAPLTSITKIDAQVRGGETR--QDYKDTRRFPPGSSLVRSPVPDP 668
           P    RP     S    P+ ++ + +A++    ++       T + PP ++L  SP P P
Sbjct: 436 PPPSTRPLPPTTSSSKKPIPTLARTEAKITSHASKPASARTSTHKPPPFTALSSSPAPTP 495

Query: 669 XRLRDTCPPFSL 704
              R T PP ++
Sbjct: 496 GSTRSTRPPATM 507


>AL356796-1|CAI16857.1| 1860|Homo sapiens collagen type XXVII alpha
           1 protein.
          Length = 1860

 Score = 30.3 bits (65), Expect = 9.3
 Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
 Frame = +3

Query: 495 PGTVKRPRCWRFSIGSAPLTSITKIDAQVRGGETR--QDYKDTRRFPPGSSLVRSPVPDP 668
           P    RP     S    P+ ++ + +A++    ++       T + PP ++L  SP P P
Sbjct: 436 PPPSTRPLPPTTSSSKKPIPTLARTEAKITSHASKPASARTSTHKPPPFTALSSSPAPTP 495

Query: 669 XRLRDTCPPFSL 704
              R T PP ++
Sbjct: 496 GSTRSTRPPATM 507


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,087,424
Number of Sequences: 237096
Number of extensions: 2368881
Number of successful extensions: 11347
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11098
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11337
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10872716010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)