Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_G07
         (860 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr 1|||...    39   0.001
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc...    33   0.039
SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomy...    33   0.052
SPAC343.18 |rfp2||ubiquitin-protein ligase E3 Rfp2|Schizosacchar...    26   6.0  
SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyce...    26   7.9  
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    26   7.9  

>SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 504

 Score = 38.7 bits (86), Expect = 0.001
 Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
 Frame = +1

Query: 574 CGHYFCNDCWAMHFEVQIMQGVSNTIRCMAQNCEVRAPEDFVLSHVTKPALRDRYHXSCL 753
           C H FC  C+  + + +I +G S  I+C  ++C        +   + + +L DRYH    
Sbjct: 147 CDHEFCLACYRQYLDSRISEGES-VIQCPEESCTQIVSIQSITKVLDEKSL-DRYHRLLD 204

Query: 754 KIML-ISPXLRFCPGPTVSGSFEHH 825
           +  +  +  LR+CP P    + E H
Sbjct: 205 RSFVDDNDHLRWCPAPDCEFAIECH 229


>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
           Apc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1458

 Score = 33.5 bits (73), Expect = 0.039
 Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
 Frame = -2

Query: 676 PHSFEPCSVLYLRLLALFELQNAL--PNSRCKNNVHMLVHYTCAVEVCWHKQHNLICLIY 503
           PHS   CS ++ + L+L +L + L  PN   +N V  +V    + + C      ++C+I+
Sbjct: 564 PHS---CSTMFPQTLSLMQLLDCLLNPNMTLQNLVEEMVRLGISRKRCERYPFGILCIIF 620

Query: 502 FVKALVASPY 473
            V  + A  Y
Sbjct: 621 TVLEIAAEEY 630


>SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 435

 Score = 33.1 bits (72), Expect = 0.052
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +1

Query: 574 CGHYFCNDCWAMHFEVQIMQGVSNTIRCMAQNCEVRAP 687
           CGH  C  C   ++ + I +G+ + I+C+  +C   AP
Sbjct: 192 CGHVSCQSCLRDYYTMCIQEGMFSQIKCIDLDCGKDAP 229


>SPAC343.18 |rfp2||ubiquitin-protein ligase E3
           Rfp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 205

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 14/45 (31%), Positives = 19/45 (42%)
 Frame = +1

Query: 565 ALACGHYFCNDCWAMHFEVQIMQGVSNTIRCMAQNCEVRAPEDFV 699
           A  CGH FC+ C A             T+ C  Q+C  R  + F+
Sbjct: 164 AAKCGHLFCSTC-AKELR-------KKTVPCPVQHCRKRITKKFI 200


>SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 497

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 11/43 (25%), Positives = 23/43 (53%)
 Frame = +1

Query: 601 WAMHFEVQIMQGVSNTIRCMAQNCEVRAPEDFVLSHVTKPALR 729
           W  H  +Q+   +++T+ C A +  V     FV++++   +LR
Sbjct: 376 WITHHYIQLGYQLADTVSCAAYSFAVSCALLFVMNYIPGLSLR 418


>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 486

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 4/65 (6%)
 Frame = +1

Query: 574 CGHYFCNDCWAMHFEVQIMQGVSNTIRCMAQNCEVRAPEDFVLSHVTKPA----LRDRYH 741
           CGH FC  C        +MQ ++ + +C    C    P   VL H    +    LRD Y 
Sbjct: 184 CGHTFCGPC--------LMQALTQSPQC--PTCRFGLPSPVVLEHAKSHSITTFLRDFYP 233

Query: 742 XSCLK 756
            + L+
Sbjct: 234 DNWLE 238


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,926,247
Number of Sequences: 5004
Number of extensions: 53082
Number of successful extensions: 129
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)