Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_G05
         (888 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   8.6  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   8.6  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   8.6  

>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 20/77 (25%), Positives = 30/77 (38%), Gaps = 4/77 (5%)
 Frame = +1

Query: 520 KSDQTPSKSPATSNVRNAGTSSSRLDETLDNMSRNVEDRFESHPSARLHG----LSQESA 687
           KS  TP  +         G   SR   +LDN + N +D + S     +H     L+  S 
Sbjct: 337 KSTLTPKLARKQFQKNTTGLERSRSWSSLDNTNTNDQD-YSSQNYLTVHSFPSTLNIPSV 395

Query: 688 KSPETENERVNNILDSN 738
           K  E +   + +I   N
Sbjct: 396 KIDEDQKCSIESITSVN 412


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +1

Query: 418 DRRLDEINTNLNYSQK 465
           ++ L+E+N NLNY  K
Sbjct: 50  EQTLNELNFNLNYVNK 65


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 355 EQIGIATAEELSRQREQLQNTDRR 426
           ++ GI   EE+ R RE  +N D R
Sbjct: 481 DRSGIDINEEIQRNREFYKNADVR 504


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 218,332
Number of Sequences: 438
Number of extensions: 4921
Number of successful extensions: 18
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28662543
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)