Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP10_F_G03
(865 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_1008 - 7987936-7988628,7988923-7989102 34 0.17
10_01_0038 + 437738-438122,439215-439501,440111-440375,440687-44... 31 1.6
01_05_0333 + 21064693-21066006 30 2.7
07_01_1201 - 11419851-11419913,11420090-11420311 29 4.8
06_01_0964 - 7417158-7417517,7417596-7417868,7418400-7418810,741... 29 6.3
03_06_0149 - 31987183-31987630,31987813-31987874 29 6.3
03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343 29 6.3
01_03_0308 - 14883728-14884120 29 6.3
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095... 28 8.4
02_04_0270 - 21439788-21441680 28 8.4
>01_01_1008 - 7987936-7988628,7988923-7989102
Length = 290
Score = 33.9 bits (74), Expect = 0.17
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = -1
Query: 721 RKRHASRREKGGQVSXKRQGRNRRAHEGAFQGETPG 614
R R RR GG+V+ + R+RR GA++GE G
Sbjct: 239 RVRRRGRRGGGGEVNGEEAARSRRRRRGAWEGEEEG 274
>10_01_0038 +
437738-438122,439215-439501,440111-440375,440687-440784
Length = 344
Score = 30.7 bits (66), Expect = 1.6
Identities = 28/88 (31%), Positives = 36/88 (40%)
Frame = -1
Query: 652 RAHEGAFQGETPGIFIVLSGFATSDLSVDFCDARQGGGAYGKTPATRPFYGSWPFAGLLL 473
R H+ F G G L G + LS R GGG P+TR G G +
Sbjct: 213 RGHDTVFDGVYVGRRWRLGGGSDGVLSSARSGGRGGGGDDSALPSTRS-GGKGDSGGSVA 271
Query: 472 TCSFLRYPLILWITVLPPLSELIPLAAA 389
T S R + + PPLS LI +A +
Sbjct: 272 TASPHRLQMAGNPRLSPPLSPLISIAGS 299
>01_05_0333 + 21064693-21066006
Length = 437
Score = 29.9 bits (64), Expect = 2.7
Identities = 22/68 (32%), Positives = 31/68 (45%)
Frame = -2
Query: 786 ANSPAWSERPTPELRYLQREL*ESATLPEGRKADRYPVSGRVGTGERTRELSRGKRLVSL 607
+N AW + R + E A L + R+A R PV+ + TG+ R R RL S
Sbjct: 372 SNGRAWGSQAANMRRGSSEQPRERAPLHQQRRAGR-PVNSQRPTGDMVRSSGRASRLAS- 429
Query: 606 *SCRVSPP 583
+V PP
Sbjct: 430 ---QVRPP 434
>07_01_1201 - 11419851-11419913,11420090-11420311
Length = 94
Score = 29.1 bits (62), Expect = 4.8
Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Frame = +1
Query: 538 LRPPDEHHKNRRSSQRWRN--PTGL*RYQAFPPGKLPRALSCSDPA 669
L PP Q+WR+ PTG + +FP G LP A PA
Sbjct: 13 LLPPPPPLPALPQGQQWRSTGPTGKLCFCSFPAGALPPAAGAGQPA 58
>06_01_0964 -
7417158-7417517,7417596-7417868,7418400-7418810,
7419270-7419347
Length = 373
Score = 28.7 bits (61), Expect = 6.3
Identities = 15/33 (45%), Positives = 17/33 (51%)
Frame = +2
Query: 680 YLSAFLPSGSVALSHSSRCRYLSSGVGRSLQAG 778
Y S P SV L HSS C + S V L+AG
Sbjct: 139 YYSRLFPRQSVHLFHSSYCLHWRSQVPEGLEAG 171
>03_06_0149 - 31987183-31987630,31987813-31987874
Length = 169
Score = 28.7 bits (61), Expect = 6.3
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -1
Query: 727 AMRKRHASRREKGGQVSXKRQGRNRRAHEGAFQGETP 617
A+ + H R + + +R+GR R AHEG G P
Sbjct: 76 AVARGHGLERLQEAGIEAERRGRRRNAHEGIKIGAEP 112
>03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343
Length = 356
Score = 28.7 bits (61), Expect = 6.3
Identities = 22/56 (39%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Frame = +2
Query: 350 PLPRSLTRCARSF--GCGERYQLTQRR*YGYPQNQGITQ--ERTCEQKASKRPGTV 505
P PRS RC GCG R Q TQR P N IT E TC ++ P +
Sbjct: 150 PYPRSYYRCTHKLDQGCGARRQ-TQRC-EADPSNYDITYYGEHTCRDPSTIIPTAI 203
>01_03_0308 - 14883728-14884120
Length = 130
Score = 28.7 bits (61), Expect = 6.3
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Frame = +3
Query: 597 DRTIKIPGVSPWKAPSCALLFRP---CRLXDTCPPFSLREAWR 716
+R +I G + PS A L+R C +CPP E WR
Sbjct: 65 ERAPEIGGAVAGRKPSLAELWRRHRRCSCNSSCPPIEREERWR 107
>10_08_0940 -
21708557-21708733,21709058-21709142,21709330-21709551,
21710640-21710815,21711883-21711946,21712433-21712507,
21715114-21715199,21715297-21716715
Length = 767
Score = 28.3 bits (60), Expect = 8.4
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Frame = +2
Query: 299 NESAN---ARGEAVCVLGALPLPRSLTRCAR 382
+ESAN AR EAV +G +P+ L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464
>02_04_0270 - 21439788-21441680
Length = 630
Score = 28.3 bits (60), Expect = 8.4
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = -2
Query: 840 QDDSYRIRRSGRAERGVXANSPAWSERPTPELRYLQR 730
+DDSYR+ R+G RG +S RPT EL +R
Sbjct: 592 EDDSYRMSRNGGQRRG-----DGYSLRPTSELHNSRR 623
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,917,863
Number of Sequences: 37544
Number of extensions: 500970
Number of successful extensions: 1539
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1539
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2420970504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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