Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP10_F_G01
(940 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 37 0.004
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 34 0.025
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 33 0.044
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 29 0.95
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 2.9
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 27 3.8
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 37.1 bits (82), Expect = 0.004
Identities = 22/53 (41%), Positives = 22/53 (41%), Gaps = 3/53 (5%)
Frame = -3
Query: 896 HXGXXXGXXGFPXXXXKGXGNXGGGPXG-GGXXG--GXXPGXXXKXPRGXGPP 747
H G G G P G G GGGP G GG G G PG P G G P
Sbjct: 219 HHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGGPGGHGGP 271
Score = 26.6 bits (56), Expect = 5.0
Identities = 14/40 (35%), Positives = 15/40 (37%)
Frame = -1
Query: 844 GXGTXGGXPXGGXXXGXXPXGXXXXPXGGXGPPPXXGGGI 725
G G G G G P G P G G P GGG+
Sbjct: 212 GFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGL 251
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 34.3 bits (75), Expect = 0.025
Identities = 36/131 (27%), Positives = 38/131 (29%), Gaps = 2/131 (1%)
Frame = +3
Query: 459 PPPPXGGGVXFXXPXPXPPXXXXXPGCLGGGXXXPPPRGGXXXFPPXXGXPPX-KXFFPX 635
PP P G P P P G P P P G PP K
Sbjct: 1112 PPVPAPSGAP---PVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAA 1168
Query: 636 GPXRAXTXKXARXGGXFXXGPP-PPGXXXXKIPPPXXGGGPXPPXGFXXXPXGXXPXXXP 812
P A + PP PP +P P G P PP P P P
Sbjct: 1169 PPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPP------PSTAPPVPTP 1222
Query: 813 PXGXPPXVPXP 845
G PP VP P
Sbjct: 1223 SAGLPP-VPVP 1232
Score = 29.1 bits (62), Expect = 0.95
Identities = 35/135 (25%), Positives = 35/135 (25%), Gaps = 6/135 (4%)
Frame = +3
Query: 459 PPPPXGGGVXFXXPXPXPPXXXXXPG--CLGGGXXXPPPRGGXXXFPPXXGXPPXKXFFP 632
PP P P P P P G P P G P PP
Sbjct: 1050 PPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPK--- 1106
Query: 633 XGPXRAXTXKXARXGGXFXXGPPPPGXXXXKIPPPXXGGGPXPPXGFXXXPXGXXPXXXP 812
P A A G PP P P P G P P P P P
Sbjct: 1107 --PSVAVPPVPAPSGA-----PPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAP 1159
Query: 813 PXGXP----PXVPXP 845
P P P VP P
Sbjct: 1160 PVPKPSVAAPPVPAP 1174
Score = 28.3 bits (60), Expect = 1.7
Identities = 30/120 (25%), Positives = 30/120 (25%), Gaps = 4/120 (3%)
Frame = +3
Query: 498 PXPXPPXXXXXPGCLGGGXXXPPPRGGXXXFPPXXGXPPXKXFFPXGPXRAXTXKXARXG 677
P PP G P P P G PP P G A
Sbjct: 1046 PTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPA--PSGIPPVPKPSVA--- 1100
Query: 678 GXFXXGPPPPGXXXXKIPPPXXGGGPXPPXGFXXXPXGXXPXXXPPXGXP----PXVPXP 845
PP P P P G P P P P PP P P VP P
Sbjct: 1101 -----APPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAP 1155
Score = 26.6 bits (56), Expect = 5.0
Identities = 21/73 (28%), Positives = 23/73 (31%), Gaps = 1/73 (1%)
Frame = +3
Query: 630 PXGPXRAXTXKXARXGGXFXXGPPPPGXXXXKIPP-PXXGGGPXPPXGFXXXPXGXXPXX 806
P P T + PPP +IP P G P P P G P
Sbjct: 1041 PPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVP-----APSGIPPVP 1095
Query: 807 XPPXGXPPXVPXP 845
P PP VP P
Sbjct: 1096 KPSVAAPP-VPKP 1107
Score = 25.8 bits (54), Expect = 8.8
Identities = 29/118 (24%), Positives = 29/118 (24%), Gaps = 2/118 (1%)
Frame = +3
Query: 498 PXPXPPXXXXXPGCLGGGXXXPPPRGGXXXFPPXXGXPPXKXFFPXGPXRAXTXKXARXG 677
P P P G P P P G PP P
Sbjct: 1103 PVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVP 1162
Query: 678 GXFXXGPPPPGXXXXKIPPPXXGGG--PXPPXGFXXXPXGXXPXXXPPXGXPPXVPXP 845
PP P P P G P PP P P P G PP VP P
Sbjct: 1163 KPSVAAPPVPAPSSGIPPVPKPAAGVPPVPP------PSEAPPVPKPSVGVPP-VPPP 1213
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 33.5 bits (73), Expect = 0.044
Identities = 19/54 (35%), Positives = 20/54 (37%)
Frame = +3
Query: 453 KXPPPPXGGGVXFXXPXPXPPXXXXXPGCLGGGXXXPPPRGGXXXFPPXXGXPP 614
K PPPP V P P P +GG PPP G PP PP
Sbjct: 730 KSPPPPPPA-VIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782
Score = 28.7 bits (61), Expect = 1.2
Identities = 14/43 (32%), Positives = 14/43 (32%)
Frame = -3
Query: 338 PPIXPKXXFXPXXXXGGGPXPPKXXXXXGXPXPPPKGGXPXPG 210
PP P P P PP G P PPP G G
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAG 774
Score = 28.3 bits (60), Expect = 1.7
Identities = 14/37 (37%), Positives = 15/37 (40%)
Frame = +1
Query: 781 SPGXXPPXXPPPXGPPPXFPXPLXXXXGKPXXPXFXP 891
+P PP P GPPP P P G P P P
Sbjct: 747 APIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 27.1 bits (57), Expect = 3.8
Identities = 15/50 (30%), Positives = 15/50 (30%)
Frame = +3
Query: 696 PPPPGXXXXKIPPPXXGGGPXPPXGFXXXPXGXXPXXXPPXGXPPXVPXP 845
PPPP P P P P P P G PP P P
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 29.1 bits (62), Expect = 0.95
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +1
Query: 784 PGXXPPXXPPPXGPPPXFPXP 846
PG PP PPP PP P P
Sbjct: 6 PGNPPPPPPPPGFEPPSQPPP 26
Score = 28.7 bits (61), Expect = 1.2
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = +1
Query: 796 PPXXPPPXGPPPXFPXP 846
PP PPP PPP F P
Sbjct: 5 PPGNPPPPPPPPGFEPP 21
Score = 27.5 bits (58), Expect = 2.9
Identities = 10/23 (43%), Positives = 10/23 (43%)
Frame = +2
Query: 812 PXGXPPPXSPXPXXXXPGNPXXP 880
P G PPP P P P P P
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPP 27
Score = 26.2 bits (55), Expect = 6.7
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = +1
Query: 784 PGXXPPXXPPPXGPP 828
PG PP PPP PP
Sbjct: 16 PGFEPPSQPPPPPPP 30
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 27.5 bits (58), Expect = 2.9
Identities = 15/50 (30%), Positives = 15/50 (30%), Gaps = 2/50 (4%)
Frame = +3
Query: 696 PPPPGXXXXKIPPPXXGGGPXPPXGFXXXPXGXXPXXXP--PXGXPPXVP 839
PP IPPP P P P P P P PP P
Sbjct: 139 PPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAP 188
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 27.1 bits (57), Expect = 3.8
Identities = 14/47 (29%), Positives = 14/47 (29%)
Frame = +2
Query: 752 AXPPXGXXXXPXGXXPXXXPPXGXPPPXSPXPXXXXPGNPXXPXFXP 892
A PP P P P PP P GNP P P
Sbjct: 1881 APPPPPPMALPKAGPPSAAPTSALPPAGPPAGATAISGNPGMPAPVP 1927
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,300,195
Number of Sequences: 5004
Number of extensions: 36722
Number of successful extensions: 163
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 477327454
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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