Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_F24
         (974 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    33   0.061
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    31   0.19 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    31   0.33 
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    30   0.57 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   1.7  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    28   2.3  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    26   9.3  

>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 33.1 bits (72), Expect = 0.061
 Identities = 28/88 (31%), Positives = 30/88 (34%)
 Frame = -1

Query: 890 GGXQXAXPPSPXXGXXXGXGGDXLXGXAXXXERVXXPGGXXXGGTXPGGXKXXGXXFFPR 711
           GG     PP P  G   G GG    G           GG    G  PGG +     F   
Sbjct: 194 GGGSGGPPPGP--GGFGGFGGFGGEGHHH--------GGHGGFGGGPGGFEGGPGGFGGG 243

Query: 710 PGVWGAXXXWGKXXPFGGGGXPGXXGXP 627
           PG +G         P G GG PG  G P
Sbjct: 244 PGGFGGGLGGFGGGPGGFGGGPGGHGGP 271


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 31.5 bits (68), Expect = 0.19
 Identities = 21/77 (27%), Positives = 24/77 (31%), Gaps = 1/77 (1%)
 Frame = +2

Query: 743  PPPXGSPPGXXPPGXXPFXXPXLXRLTXPPXXXXXXPXXG-RGAXPXGPPXXGFXRNXXX 919
            P P G+PP   P G  P   P +     P       P     GA P   P          
Sbjct: 1077 PAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVP 1136

Query: 920  TLXXPTXXPXPXXPPVP 970
            +   P   P    PPVP
Sbjct: 1137 SGAPPVPKPSVAAPPVP 1153



 Score = 29.9 bits (64), Expect = 0.57
 Identities = 20/76 (26%), Positives = 23/76 (30%)
 Frame = +2

Query: 746  PPXGSPPGXXPPGXXPFXXPXLXRLTXPPXXXXXXPXXGRGAXPXGPPXXGFXRNXXXTL 925
            PP   P    PP   P   P + +   P       P    G  P   P  G       + 
Sbjct: 1140 PPVPKPSVAAPPVPAPSGAPPVPK---PSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSE 1196

Query: 926  XXPTXXPXPXXPPVPP 973
              P   P    PPVPP
Sbjct: 1197 APPVPKPSVGVPPVPP 1212



 Score = 27.9 bits (59), Expect = 2.3
 Identities = 20/85 (23%), Positives = 25/85 (29%)
 Frame = +1

Query: 586  GXPPXXEKRGXGPXGXP*XPGXPPPPKGXXFPQXXXAPQTPGRGKKXNPXXFXPPGXVPP 765
            G PP     G  P   P     P P      P     P   G      P    PP  VP 
Sbjct: 1081 GAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPP---VPAPSGAPPVPKPSVAAPPVPVPS 1137

Query: 766  XXXPPGXXTLSXSXAXPXNXSPPXP 840
               P    +++       + +PP P
Sbjct: 1138 GAPPVPKPSVAAPPVPAPSGAPPVP 1162


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 30.7 bits (66), Expect = 0.33
 Identities = 35/152 (23%), Positives = 41/152 (26%), Gaps = 13/152 (8%)
 Frame = +1

Query: 556 PPGYPXGXXRGXPPXXEKRGXGPXGXP*XP-------GXPPPPKGXXFPQXXXAPQTPGR 714
           PP  P    RG PP            P  P         P PP+G   P        P  
Sbjct: 313 PPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPST 372

Query: 715 GKKXNPXXFXPPGXVPPXXXP--PGXXTLS---XSXAXPXNXSP-PXPXXXPXXGEGGXA 876
           G++  P         PP   P  PG    +      A   +  P P P   P        
Sbjct: 373 GRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLP 432

Query: 877 XWXPPXXVXAXPGXNPXXPHXGASSXXPPGAP 972
              PP      P   P  P    +   P G P
Sbjct: 433 PSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMP 464


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 29.9 bits (64), Expect = 0.57
 Identities = 30/94 (31%), Positives = 35/94 (37%), Gaps = 1/94 (1%)
 Frame = +1

Query: 694 APQTPGRGKKXNPXXFXPPG-XVPPXXXPPGXXTLSXSXAXPXNXSPPXPXXXPXXGEGG 870
           AP  PG      P  F PPG  +PP    PG   L+ S        PP          G 
Sbjct: 483 APFIPGTSAPLPPTTFAPPGVPLPPIPGAPGMPNLNMS-------QPPMVPPGMALPPGM 535

Query: 871 XAXWXPPXXVXAXPGXNPXXPHXGASSXXPPGAP 972
            A +     V A PG        GA++  PPGAP
Sbjct: 536 PAPFPGYPAVPAMPGI------PGATA--PPGAP 561


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 13/46 (28%), Positives = 16/46 (34%)
 Frame = +3

Query: 582 PGGPPPX*KKGXGPXXXPXXPXGTXPPKGAXFSPXXXGPPNPRAXE 719
           P  PPP    G GP   P  P          ++P     P P+  E
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQAEPEPKIDE 807


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 11/25 (44%), Positives = 11/25 (44%)
 Frame = +2

Query: 731 PXXXPPPXGSPPGXXPPGXXPFXXP 805
           P   PPP   PPG  PP   P   P
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPP 29



 Score = 27.9 bits (59), Expect = 2.3
 Identities = 13/30 (43%), Positives = 13/30 (43%)
 Frame = +1

Query: 634 P*XPGXPPPPKGXXFPQXXXAPQTPGRGKK 723
           P  P  PPPP G   P     P  PG  KK
Sbjct: 6   PGNPPPPPPPPGFEPPSQPPPPPPPGYVKK 35


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 26/99 (26%), Positives = 27/99 (27%), Gaps = 9/99 (9%)
 Frame = +1

Query: 592 PPXXEKRGXGPXGXP*XPGXPP---------PPKGXXFPQXXXAPQTPGRGKKXNPXXFX 744
           PP  +     P   P  P  PP         P K    P     P  P    K  P    
Sbjct: 130 PPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPS 189

Query: 745 PPGXVPPXXXPPGXXTLSXSXAXPXNXSPPXPXXXPXXG 861
            P  VPP   PP       S A   N S       P  G
Sbjct: 190 LPSAVPP--MPPKVPPPPLSQAPVANTSSRPSSFAPPAG 226


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.151    0.532 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,144,249
Number of Sequences: 5004
Number of extensions: 28326
Number of successful extensions: 66
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 501293686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)