Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP10_F_F22
(1035 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 34 0.038
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 33 0.066
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 33 0.087
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 31 0.35
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 30 0.61
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 3.3
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 27 5.7
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 5.7
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc... 26 7.6
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 26 10.0
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 33.9 bits (74), Expect = 0.038
Identities = 13/31 (41%), Positives = 13/31 (41%)
Frame = +2
Query: 782 PPPXXXTPXXPPXPXPXXAPPPXXXXAPPPP 874
PPP P P P P P P PPPP
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPAPIMGGPPPPP 765
Score = 31.9 bits (69), Expect = 0.15
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = -2
Query: 743 PPPPGGGGGXXXPPPPP 693
PPPPG G PPPPP
Sbjct: 765 PPPPGVAGAGPPPPPPP 781
Score = 31.1 bits (67), Expect = 0.27
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = -2
Query: 743 PPPPGGGGGXXXPPPPP 693
PPPP G G PPPPP
Sbjct: 764 PPPPPGVAGAGPPPPPP 780
Score = 30.3 bits (65), Expect = 0.46
Identities = 12/31 (38%), Positives = 12/31 (38%)
Frame = +2
Query: 782 PPPXXXTPXXPPXPXPXXAPPPXXXXAPPPP 874
PPP P P P PPP PPP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPP 763
Score = 29.9 bits (64), Expect = 0.61
Identities = 15/35 (42%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Frame = +1
Query: 427 PXPXLAPTXXPPPXK-XXXPPPPXGPPLXXFPXPP 528
P P AP PPP PPPP PP PP
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPP 776
Score = 29.5 bits (63), Expect = 0.81
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = -2
Query: 743 PPPPGGGGGXXXPPPPPXXXP 681
PPPP G PPPPP P
Sbjct: 763 PPPPPPGVAGAGPPPPPPPPP 783
Score = 29.1 bits (62), Expect = 1.1
Identities = 14/32 (43%), Positives = 14/32 (43%)
Frame = +3
Query: 756 PPPXXGGGXPPPXXTXLXXPPXPXXGXPPPPP 851
PP GG PPP PP PPPPP
Sbjct: 753 PPAPIMGGPPPP-----PPPPGVAGAGPPPPP 779
Score = 27.9 bits (59), Expect = 2.5
Identities = 12/34 (35%), Positives = 13/34 (38%)
Frame = +1
Query: 427 PXPXLAPTXXPPPXKXXXPPPPXGPPLXXFPXPP 528
P P P P P PPPP P + PP
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPP 777
Score = 27.5 bits (58), Expect = 3.3
Identities = 13/34 (38%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
Frame = +3
Query: 756 PPPXXGGGXPPPXXTXLXXPPXPXX--GXPPPPP 851
PPP P P + PP G PPPPP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPP 766
Score = 26.6 bits (56), Expect = 5.7
Identities = 11/31 (35%), Positives = 11/31 (35%)
Frame = +2
Query: 782 PPPXXXTPXXPPXPXPXXAPPPXXXXAPPPP 874
PPP PP P P PPPP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782
Score = 26.6 bits (56), Expect = 5.7
Identities = 16/39 (41%), Positives = 16/39 (41%)
Frame = +2
Query: 758 PPXXRGGXPPPXXXTPXXPPXPXPXXAPPPXXXXAPPPP 874
PP G PPP P PP PPP PPPP
Sbjct: 753 PPAPIMGGPPP----PPPPPGVAGAGPPPP----PPPPP 783
Score = 26.2 bits (55), Expect = 7.6
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = -2
Query: 743 PPPPGGGGGXXXPPPPP 693
PPP GG PPPPP
Sbjct: 752 PPPAPIMGGPPPPPPPP 768
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 33.1 bits (72), Expect = 0.066
Identities = 15/39 (38%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Frame = +3
Query: 756 PPPXXGGGXPP-PXXTXLXXPPXPXXGXPPPPPXTXRPP 869
P P G PP P + P P G PP PP + PP
Sbjct: 1180 PVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPP 1218
Score = 29.5 bits (63), Expect = 0.81
Identities = 15/39 (38%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Frame = +2
Query: 758 PPXXRGGXPPPXXXTPXXPPXPXPXXAPP-PXXXXAPPP 871
P G PP + PP P P APP P A PP
Sbjct: 1113 PVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPP 1151
Score = 29.5 bits (63), Expect = 0.81
Identities = 15/39 (38%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Frame = +2
Query: 758 PPXXRGGXPPPXXXTPXXPPXPXPXXAPP-PXXXXAPPP 871
P G PP + PP P P APP P A PP
Sbjct: 1132 PVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPP 1170
Score = 29.5 bits (63), Expect = 0.81
Identities = 15/41 (36%), Positives = 15/41 (36%), Gaps = 3/41 (7%)
Frame = +2
Query: 761 PXXRGGXPPPXXXTPXXPPXPXPXXAPP---PXXXXAPPPP 874
P G PP PP P P APP P P PP
Sbjct: 1172 PAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPP 1212
Score = 29.1 bits (62), Expect = 1.1
Identities = 12/38 (31%), Positives = 15/38 (39%)
Frame = +3
Query: 756 PPPXXGGGXPPPXXTXLXXPPXPXXGXPPPPPXTXRPP 869
P P P + + P P G PP PP + PP
Sbjct: 1162 PKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPP 1199
Score = 28.7 bits (61), Expect = 1.4
Identities = 14/39 (35%), Positives = 15/39 (38%), Gaps = 1/39 (2%)
Frame = +2
Query: 761 PXXRGGXPPPXXXTPXXPPXPXPXXAPP-PXXXXAPPPP 874
P PP + PP P P APP P PP P
Sbjct: 1015 PKLSSKAPPVPLPSADAPPIPVPSTAPPVPIPTSTPPVP 1053
Score = 28.3 bits (60), Expect = 1.9
Identities = 13/39 (33%), Positives = 15/39 (38%)
Frame = +2
Query: 758 PPXXRGGXPPPXXXTPXXPPXPXPXXAPPPXXXXAPPPP 874
P G PP + PP P P A PP + PP
Sbjct: 1084 PVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPP 1122
Score = 27.9 bits (59), Expect = 2.5
Identities = 15/40 (37%), Positives = 16/40 (40%), Gaps = 2/40 (5%)
Frame = +3
Query: 756 PPPXXGGGXPPPXXTXLXXPPXPXX-GXPP-PPPXTXRPP 869
PP G PP + PP P G PP P P PP
Sbjct: 1112 PPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPP 1151
Score = 27.9 bits (59), Expect = 2.5
Identities = 15/40 (37%), Positives = 16/40 (40%), Gaps = 2/40 (5%)
Frame = +3
Query: 756 PPPXXGGGXPPPXXTXLXXPPXPXX-GXPP-PPPXTXRPP 869
PP G PP + PP P G PP P P PP
Sbjct: 1131 PPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPP 1170
Score = 27.9 bits (59), Expect = 2.5
Identities = 14/39 (35%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Frame = +3
Query: 756 PPPXXGGGXPP-PXXTXLXXPPXPXXGXPPPPPXTXRPP 869
P P G PP P + P P G PP P T + P
Sbjct: 1199 PVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAP 1237
Score = 27.1 bits (57), Expect = 4.3
Identities = 13/31 (41%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Frame = +2
Query: 782 PPPXXXTPXXPPXPXPXXAPP-PXXXXAPPP 871
PP + PP P P APP P A PP
Sbjct: 1102 PPVPKPSVAVPPVPAPSGAPPVPKPSVAAPP 1132
Score = 26.6 bits (56), Expect = 5.7
Identities = 11/30 (36%), Positives = 12/30 (40%)
Frame = +2
Query: 785 PPXXXTPXXPPXPXPXXAPPPXXXXAPPPP 874
PP PP P P A PP + PP
Sbjct: 1112 PPVPAPSGAPPVPKPSVAAPPVPVPSGAPP 1141
Score = 26.6 bits (56), Expect = 5.7
Identities = 11/30 (36%), Positives = 12/30 (40%)
Frame = +2
Query: 785 PPXXXTPXXPPXPXPXXAPPPXXXXAPPPP 874
PP PP P P A PP + PP
Sbjct: 1131 PPVPVPSGAPPVPKPSVAAPPVPAPSGAPP 1160
Score = 26.2 bits (55), Expect = 7.6
Identities = 15/41 (36%), Positives = 16/41 (39%), Gaps = 3/41 (7%)
Frame = +3
Query: 756 PPPXXGGGXPPPXXTXLXXP--PXPXXGXPP-PPPXTXRPP 869
PP G PP + P P P G PP P P PP
Sbjct: 1150 PPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPP 1190
Score = 26.2 bits (55), Expect = 7.6
Identities = 11/32 (34%), Positives = 11/32 (34%)
Frame = +3
Query: 756 PPPXXGGGXPPPXXTXLXXPPXPXXGXPPPPP 851
P P G PP PP P PP P
Sbjct: 1170 PVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVP 1201
Score = 26.2 bits (55), Expect = 7.6
Identities = 12/31 (38%), Positives = 13/31 (41%)
Frame = +2
Query: 782 PPPXXXTPXXPPXPXPXXAPPPXXXXAPPPP 874
PP + PP P P APP A PP
Sbjct: 1198 PPVPKPSVGVPPVPPPSTAPPVPTPSAGLPP 1228
Score = 25.8 bits (54), Expect = 10.0
Identities = 13/40 (32%), Positives = 15/40 (37%), Gaps = 2/40 (5%)
Frame = +3
Query: 756 PPPXXGGGXPPPXXTXLXXP--PXPXXGXPPPPPXTXRPP 869
PP G PP + P P P PP P + PP
Sbjct: 1083 PPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPP 1122
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 32.7 bits (71), Expect = 0.087
Identities = 16/39 (41%), Positives = 17/39 (43%)
Frame = +2
Query: 758 PPXXRGGXPPPXXXTPXXPPXPXPXXAPPPXXXXAPPPP 874
PP PPP + PP P A PP APPPP
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMPAGPP---SAPPPP 1734
Score = 31.1 bits (67), Expect = 0.27
Identities = 14/31 (45%), Positives = 15/31 (48%)
Frame = +1
Query: 427 PXPXLAPTXXPPPXKXXXPPPPXGPPLXXFP 519
P APT PPP PPPP PP+ P
Sbjct: 1699 PPQMSAPTPPPPPMS--VPPPPSAPPMPAGP 1727
Score = 28.3 bits (60), Expect = 1.9
Identities = 15/34 (44%), Positives = 15/34 (44%)
Frame = +1
Query: 427 PXPXLAPTXXPPPXKXXXPPPPXGPPLXXFPXPP 528
P P P PPP PP P GPP P PP
Sbjct: 1705 PTPPPPPMSVPPPPSA--PPMPAGPP--SAPPPP 1734
Score = 27.5 bits (58), Expect = 3.3
Identities = 11/28 (39%), Positives = 12/28 (42%)
Frame = +3
Query: 786 PPXXTXLXXPPXPXXGXPPPPPXTXRPP 869
PP PP PPPPP + PP
Sbjct: 1690 PPVRPQSAAPPQMSAPTPPPPPMSVPPP 1717
Score = 27.1 bits (57), Expect = 4.3
Identities = 13/37 (35%), Positives = 15/37 (40%)
Frame = +3
Query: 756 PPPXXGGGXPPPXXTXLXXPPXPXXGXPPPPPXTXRP 866
PPP PPP + P P PPP P + P
Sbjct: 1707 PPPPPMSVPPPPSAPPM--PAGPPSAPPPPLPASSAP 1741
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 30.7 bits (66), Expect = 0.35
Identities = 14/38 (36%), Positives = 14/38 (36%)
Frame = +2
Query: 761 PXXRGGXPPPXXXTPXXPPXPXPXXAPPPXXXXAPPPP 874
P PP P PP P A PP AP PP
Sbjct: 440 PMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPP 477
Score = 30.3 bits (65), Expect = 0.46
Identities = 13/31 (41%), Positives = 13/31 (41%)
Frame = +2
Query: 782 PPPXXXTPXXPPXPXPXXAPPPXXXXAPPPP 874
PP P PP P APPP AP P
Sbjct: 457 PPLPAGMPAAPPLPPAAPAPPPAPAPAPAAP 487
Score = 25.8 bits (54), Expect = 10.0
Identities = 15/39 (38%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Frame = +3
Query: 756 PPPXXGGGXPPPXXTXLXXPPXPXXG--XPPPPPXTXRP 866
PPP PPP P P G PPPPP P
Sbjct: 337 PPPP-----PPPRSNAAGSIPLPPQGRSAPPPPPPRSAP 370
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 29.9 bits (64), Expect = 0.61
Identities = 17/35 (48%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
Frame = -1
Query: 519 GEXXXXGXPGG--GGXXXFSGG-GXXGGGQXGGGG 424
G G PGG GG F GG G GGG G GG
Sbjct: 236 GPGGFGGGPGGFGGGLGGFGGGPGGFGGGPGGHGG 270
Score = 29.5 bits (63), Expect = 0.81
Identities = 20/50 (40%), Positives = 20/50 (40%), Gaps = 3/50 (6%)
Frame = -1
Query: 519 GEXXXXGXPGG--GGXXXFSGG-GXXGGGQXGGGGXXXXSPXXXGXFXPG 379
GE G GG GG F GG G GGG G GG G F G
Sbjct: 215 GEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGG 264
Score = 29.1 bits (62), Expect = 1.1
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = +1
Query: 682 GXXXGGGGGXXXPPPPPGGGG 744
G G GGG PPP PGG G
Sbjct: 188 GGFGGFGGGSGGPPPGPGGFG 208
Score = 29.1 bits (62), Expect = 1.1
Identities = 17/47 (36%), Positives = 18/47 (38%)
Frame = -2
Query: 335 FFGXXGGAXXPPPXXGGXPXXXGXXXXXXXGXXXXXGGGXPXXPGGF 195
F G GG+ PPP GG G G GG PGGF
Sbjct: 190 FGGFGGGSGGPPPGPGG---FGGFGGFGGEGHHHGGHGGFGGGPGGF 233
Score = 29.1 bits (62), Expect = 1.1
Identities = 15/38 (39%), Positives = 15/38 (39%)
Frame = -1
Query: 870 GGGAXXXXGGGAXXGXGXGGXXGVXXXGGGXPPRXXGG 757
GGG GG G G GG G GG P GG
Sbjct: 227 GGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGG 264
Score = 27.9 bits (59), Expect = 2.5
Identities = 16/40 (40%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
Frame = -1
Query: 495 PGG-GGXXXFSGGGXXGGGQXGGGGXXXXSPXXXGXFXPG 379
PGG GG F G G GG G GG G F G
Sbjct: 204 PGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGG 243
Score = 27.1 bits (57), Expect = 4.3
Identities = 17/39 (43%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
Frame = -2
Query: 527 GGXGKXXXGGPXG-GGGXXFFXGG-GXXVGAKXGXGXXP 417
GG GGP G GGG F GG G G G G P
Sbjct: 227 GGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGGP 265
Score = 26.6 bits (56), Expect = 5.7
Identities = 19/51 (37%), Positives = 19/51 (37%), Gaps = 4/51 (7%)
Frame = -1
Query: 519 GEXXXXGXPGG--GGXXXFSGG--GXXGGGQXGGGGXXXXSPXXXGXFXPG 379
G G PGG GG F GG G GG GGG G PG
Sbjct: 222 GHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGGPGGHGGPG 272
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 27.5 bits (58), Expect = 3.3
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = +2
Query: 812 PPXPXPXXAPPPXXXXAPPPP 874
PP P P PP PPPP
Sbjct: 10 PPPPPPPGFEPPSQPPPPPPP 30
Score = 27.1 bits (57), Expect = 4.3
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = -2
Query: 743 PPPPGGGGGXXXPPPPP 693
PPPP G PPPPP
Sbjct: 12 PPPPPGFEPPSQPPPPP 28
Score = 27.1 bits (57), Expect = 4.3
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = -2
Query: 743 PPPPGGGGGXXXPPPPP 693
PPPPG PPPPP
Sbjct: 13 PPPPGFEPPSQPPPPPP 29
Score = 26.6 bits (56), Expect = 5.7
Identities = 12/25 (48%), Positives = 12/25 (48%), Gaps = 2/25 (8%)
Frame = +1
Query: 460 PPXKXXXPPPPXG--PPLXXFPXPP 528
PP PPPP G PP P PP
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPP 29
Score = 25.8 bits (54), Expect = 10.0
Identities = 10/24 (41%), Positives = 10/24 (41%)
Frame = +2
Query: 803 PXXPPXPXPXXAPPPXXXXAPPPP 874
P PP P P P PPPP
Sbjct: 6 PGNPPPPPPPPGFEPPSQPPPPPP 29
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 26.6 bits (56), Expect = 5.7
Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Frame = -1
Query: 501 GXPGGGGXXXFSGGGXXGGGQ-XGGGGXXXXSP 406
G G GG F G G GGG+ G GG +P
Sbjct: 452 GRGGFGGRGGFGGRGGFGGGRGRGRGGARSGNP 484
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.6 bits (56), Expect = 5.7
Identities = 14/41 (34%), Positives = 14/41 (34%), Gaps = 2/41 (4%)
Frame = +2
Query: 758 PPXXRGGXPPPXXXTPXXPPXPXPXX--APPPXXXXAPPPP 874
PP PP P P P A PP PPPP
Sbjct: 165 PPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPPP 205
Score = 25.8 bits (54), Expect = 10.0
Identities = 15/40 (37%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
Frame = +2
Query: 758 PPXXRGGXPPPXXXTPXXPPXPXPXXAP-PPXXXXAPPPP 874
PP + PP P P P P A PP APP P
Sbjct: 130 PPTPQSELRPPTS-APPRPSIPPPSPASAPPIPSKAPPIP 168
>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 379
Score = 26.2 bits (55), Expect = 7.6
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -1
Query: 471 FSGGGXXGGGQXGGGG 424
F+GGG GGG G GG
Sbjct: 133 FAGGGGMGGGMGGMGG 148
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 25.8 bits (54), Expect = 10.0
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = +1
Query: 694 GGGGGXXXPPPPPG 735
G GG PPPPPG
Sbjct: 282 GPGGAPLVPPPPPG 295
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.316 0.154 0.556
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,854,178
Number of Sequences: 5004
Number of extensions: 23999
Number of successful extensions: 338
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 263
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 541237406
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
- SilkBase 1999-2023 -