Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_F22
         (1035 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   7.9  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   7.9  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   7.9  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 7.9
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +3

Query: 813 PPXPXXGXPPPPPXTXRP 866
           PP P    PPPPP +  P
Sbjct: 338 PPKP--APPPPPPSSSGP 353


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.2 bits (45), Expect = 7.9
 Identities = 13/30 (43%), Positives = 13/30 (43%), Gaps = 4/30 (13%)
 Frame = -1

Query: 501 GXPG----GGGXXXFSGGGXXGGGQXGGGG 424
           G PG    GG     SGG    G   GGGG
Sbjct: 20  GGPGSSSAGGVVTGASGGSIVVGANNGGGG 49


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 7.9
 Identities = 12/41 (29%), Positives = 13/41 (31%), Gaps = 3/41 (7%)
 Frame = +2

Query: 758 PPXXRGGXPPPXXXTPXXPPX---PXPXXAPPPXXXXAPPP 871
           P     G  P    +P  P     P P   PPP      PP
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 22.2 bits (45), Expect = 7.9
 Identities = 12/34 (35%), Positives = 13/34 (38%), Gaps = 3/34 (8%)
 Frame = +3

Query: 777 GXPPPXXTXLXXPPXPXXGXPPPP---PXTXRPP 869
           G P P  +    P  P  G PP P   P    PP
Sbjct: 19  GAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPP 52


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.316    0.154    0.556 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,335
Number of Sequences: 438
Number of extensions: 7179
Number of successful extensions: 43
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 34588554
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)