Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP10_F_F21
(901 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom... 30 0.52
SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual 29 0.90
SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2 |Schizosacc... 28 2.1
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom... 28 2.1
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc... 27 2.7
SPAPYUG7.02c |sin1||stress activated MAP kinase interacting prot... 27 3.6
SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|c... 27 3.6
SPAC1039.04 |||nicotinic acid plasma membrane transporter |Schiz... 27 4.8
SPBC354.01 |gtp1|SPBC649.06|GTP binding protein Gtp1|Schizosacch... 27 4.8
SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint compone... 27 4.8
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch... 26 6.3
SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces pom... 26 6.3
SPAC23D3.03c |||GTPase activating protein |Schizosaccharomyces p... 26 8.4
>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 204
Score = 29.9 bits (64), Expect = 0.52
Identities = 27/83 (32%), Positives = 36/83 (43%), Gaps = 7/83 (8%)
Frame = -1
Query: 634 WYSXWYDRH---FS*QDSSFSADPSWGPTVWMIYLAGKL*PPVTL---ASPVGHPPIESH 473
W + W +R+ F +S A P W V + + PP ++ A P G PP S+
Sbjct: 13 WVAQWDERYKCYFYVNESDPKAKPQWECPVRGLTIP----PPPSVDHSAPPSGPPPSYSN 68
Query: 472 SACKKGPAARC-MAPSTPPPAFS 407
SA PAA A P PA S
Sbjct: 69 SAAPATPAASASSAAPAPAPAAS 91
>SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 366
Score = 29.1 bits (62), Expect = 0.90
Identities = 15/55 (27%), Positives = 27/55 (49%)
Frame = +3
Query: 264 STTDDLKEFEKIKINTEKNKSISERVSIFKGDITKLEIDAIVNAANSRLKAGGGV 428
+T +KE E T+KNK+ ++ + + K + KL+ + I GGG+
Sbjct: 3 TTAQKIKEVEDEMAKTQKNKATAKHLGMLKAKLAKLKRELITPTGGG---GGGGL 54
>SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 830
Score = 27.9 bits (59), Expect = 2.1
Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Frame = -1
Query: 487 PIESHSACKKGPAARCMAPSTPPPAFSLELA-AFTIASISSLVMSPLKIETRSEMDL 320
P ES ++ G + PS+PPP FS E A A I L L +E DL
Sbjct: 16 PFESENS-SLGATPLSLPPSSPPPEFSDEAAEALVEEDIEDLDGEALDVEDEEGEDL 71
>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 27.9 bits (59), Expect = 2.1
Identities = 14/47 (29%), Positives = 27/47 (57%)
Frame = +3
Query: 195 NLEEMLILGSKYLNKSQGIDSKKSTTDDLKEFEKIKINTEKNKSISE 335
N+ + +G + K+ G+ S+K + +K+F+K ++NT SI E
Sbjct: 458 NVRPAIFIGQSAVRKAAGM-SQKLQNETVKQFQKGEVNTLIATSIGE 503
>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1679
Score = 27.5 bits (58), Expect = 2.7
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = +3
Query: 132 EFLNFH*XXDREKSINLLIS*NLEEMLILGSKYLNKSQGI-DSKKSTTDDLKE 287
EF+ DRE S+N L+S L + + ++YLN+ + I + T DD+KE
Sbjct: 1074 EFMGSRSWRDRESSVNTLVS-LLSNVPV--TEYLNQLEDIWNMSFRTLDDIKE 1123
>SPAPYUG7.02c |sin1||stress activated MAP kinase interacting protein
Sin1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 665
Score = 27.1 bits (57), Expect = 3.6
Identities = 11/42 (26%), Positives = 24/42 (57%)
Frame = +3
Query: 231 LNKSQGIDSKKSTTDDLKEFEKIKINTEKNKSISERVSIFKG 356
+NK++ + + K+ T L+ + K N+ +N ++E + F G
Sbjct: 242 VNKARSVSNAKAPTSALRALLEHKENSSQNGPLAENFATFSG 283
>SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 27.1 bits (57), Expect = 3.6
Identities = 19/66 (28%), Positives = 33/66 (50%)
Frame = +3
Query: 231 LNKSQGIDSKKSTTDDLKEFEKIKINTEKNKSISERVSIFKGDITKLEIDAIVNAANSRL 410
L KS G K S K ++ + + E+N+ + V + + ITKLE + V ++
Sbjct: 355 LEKSIGDTLKSSIRSSPKSKKRSREDFEENEDYNAMVPVKRSRITKLESE--VYYEKRKV 412
Query: 411 KAGGGV 428
+A GG+
Sbjct: 413 RALGGI 418
>SPAC1039.04 |||nicotinic acid plasma membrane transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 26.6 bits (56), Expect = 4.8
Identities = 12/39 (30%), Positives = 24/39 (61%)
Frame = +3
Query: 249 IDSKKSTTDDLKEFEKIKINTEKNKSISERVSIFKGDIT 365
+++ TD+ K K++I + + +ISE++S FK +T
Sbjct: 245 VETANFLTDEEKTLAKMRIENDSSSAISEKLS-FKQSLT 282
>SPBC354.01 |gtp1|SPBC649.06|GTP binding protein
Gtp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 26.6 bits (56), Expect = 4.8
Identities = 13/50 (26%), Positives = 23/50 (46%)
Frame = +3
Query: 273 DDLKEFEKIKINTEKNKSISERVSIFKGDITKLEIDAIVNAANSRLKAGG 422
+ ++E E T+KNK+ + + KG + KL + + S K G
Sbjct: 5 EKIQEIEAEMRRTQKNKATEYHLGLLKGKLAKLRAQLLEPTSKSGPKGEG 54
>SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint component
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 809
Score = 26.6 bits (56), Expect = 4.8
Identities = 12/41 (29%), Positives = 27/41 (65%)
Frame = +3
Query: 249 IDSKKSTTDDLKEFEKIKINTEKNKSISERVSIFKGDITKL 371
++S K ++L+E ++K+ E+N S+ +++S KG++ L
Sbjct: 652 LESLKRENEELRE--QLKVEHEENISMQKQLSELKGELNTL 690
>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1374
Score = 26.2 bits (55), Expect = 6.3
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = -3
Query: 728 LPSCT*--RYVCCKTIRKXVNSSGYTRXSDRFYLVFLXVRQ 612
+PSC R+ C+T+ + V S G R +L+FL +
Sbjct: 439 VPSCNLVIRFNICRTVTQYVQSRGRARAMASKFLIFLNTEE 479
>SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 659
Score = 26.2 bits (55), Expect = 6.3
Identities = 15/51 (29%), Positives = 29/51 (56%)
Frame = +3
Query: 222 SKYLNKSQGIDSKKSTTDDLKEFEKIKINTEKNKSISERVSIFKGDITKLE 374
S YL++ + ++S + ++ L + K ++ K KSIS+ K +I +LE
Sbjct: 224 SNYLSRIEMLESSLAKSNSLLDSSKSEMEALKAKSISDATK-HKNEIFQLE 273
>SPAC23D3.03c |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 472
Score = 25.8 bits (54), Expect = 8.4
Identities = 15/54 (27%), Positives = 29/54 (53%)
Frame = +3
Query: 225 KYLNKSQGIDSKKSTTDDLKEFEKIKINTEKNKSISERVSIFKGDITKLEIDAI 386
K++ + + I D K+ EKIK+ +KNK V++++ +I + DA+
Sbjct: 150 KHMREFEQIKKSAMRYDRQKQKEKIKMVEQKNKRNLYLVNVWEREILRNWPDAL 203
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,849,945
Number of Sequences: 5004
Number of extensions: 52986
Number of successful extensions: 191
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -