Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_F19
         (1001 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    33   0.083
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   0.78 
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    26   1.1  
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    29   1.4  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    28   2.4  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   4.1  
SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharom...    27   5.5  
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc...    27   5.5  

>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 32.7 bits (71), Expect = 0.083
 Identities = 16/28 (57%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
 Frame = -3

Query: 822 GXGGPPXKXGGG--GXGGGXXGXGGGGG 745
           G GG P   GGG  G GGG  G GGG G
Sbjct: 239 GFGGGPGGFGGGLGGFGGGPGGFGGGPG 266



 Score = 31.1 bits (67), Expect = 0.25
 Identities = 18/45 (40%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
 Frame = -3

Query: 816 GGPPXKXGG-GGXGGGXXGXGGGGGXXXXXXXXXXXGXGXKSXXG 685
           GGP    GG GG GGG  G GGG G           G G     G
Sbjct: 228 GGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGGPGGHGGPG 272



 Score = 29.5 bits (63), Expect = 0.78
 Identities = 15/28 (53%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
 Frame = -3

Query: 822 GXGGPPXKXGG--GGXGGGXXGXGGGGG 745
           G  G P   GG  GG GGG  G GGG G
Sbjct: 232 GFEGGPGGFGGGPGGFGGGLGGFGGGPG 259


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.5 bits (63), Expect = 0.78
 Identities = 12/27 (44%), Positives = 12/27 (44%)
 Frame = +1

Query: 685 PXXAFXPXPXPXXXXXXXXXPPPPPPP 765
           P  A  P P P         PPPPPPP
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPP 768



 Score = 29.1 bits (62), Expect = 1.0
 Identities = 12/30 (40%), Positives = 12/30 (40%)
 Frame = +3

Query: 678 PXPPXCFXPXPPPXLXXXXXXXXPPPPPXP 767
           P  P    P PPP          PPPPP P
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782



 Score = 27.9 bits (59), Expect = 2.4
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +1

Query: 703 PXPXPXXXXXXXXXPPPPPPP 765
           P P P         PPPPPPP
Sbjct: 763 PPPPPPGVAGAGPPPPPPPPP 783



 Score = 26.6 bits (56), Expect = 5.5
 Identities = 11/30 (36%), Positives = 11/30 (36%)
 Frame = +3

Query: 678 PXPPXCFXPXPPPXLXXXXXXXXPPPPPXP 767
           P P       PPP          PPPPP P
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781



 Score = 26.6 bits (56), Expect = 5.5
 Identities = 11/31 (35%), Positives = 11/31 (35%)
 Frame = +1

Query: 682 PPXXAFXPXPXPXXXXXXXXXPPPPPPPXXP 774
           PP       P P          PPPPPP  P
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 25.8 bits (54), Expect = 9.6
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +1

Query: 745 PPPPPPPXXP 774
           PPPPPPP  P
Sbjct: 238 PPPPPPPTLP 247



 Score = 24.2 bits (50), Expect(2) = 1.1
 Identities = 13/44 (29%), Positives = 15/44 (34%), Gaps = 2/44 (4%)
 Frame = +1

Query: 640 GXXPPXKKLXXXLRPPXXAFXPXPX--PXXXXXXXXXPPPPPPP 765
           G   P       +  P  +F P     P         PPPPPPP
Sbjct: 152 GVNAPTVSAPNSMVSPPPSFQPPSAAAPATSLPSDYNPPPPPPP 195



 Score = 23.0 bits (47), Expect(2) = 1.1
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +1

Query: 748 PPPPPPXXP 774
           PPPPPP  P
Sbjct: 189 PPPPPPPPP 197


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 13/26 (50%), Positives = 13/26 (50%)
 Frame = -3

Query: 822 GXGGPPXKXGGGGXGGGXXGXGGGGG 745
           G GG      GGG GG   G GG GG
Sbjct: 27  GFGGGRGGARGGGRGGARGGRGGRGG 52



 Score = 26.6 bits (56), Expect = 5.5
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = -3

Query: 822 GXGGPPXKXGGGGXGGGXXGXGGGGG 745
           G GG   + G GG  GG  G GGG G
Sbjct: 10  GRGGS--RGGRGGFNGGRGGFGGGRG 33



 Score = 25.8 bits (54), Expect = 9.6
 Identities = 13/25 (52%), Positives = 13/25 (52%)
 Frame = -3

Query: 822 GXGGPPXKXGGGGXGGGXXGXGGGG 748
           G GG     G GG GGG  G  GGG
Sbjct: 17  GRGG--FNGGRGGFGGGRGGARGGG 39


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +1

Query: 703 PXPXPXXXXXXXXXPPPPPPP 765
           P P P         PPPPPPP
Sbjct: 10  PPPPPPPGFEPPSQPPPPPPP 30



 Score = 25.8 bits (54), Expect = 9.6
 Identities = 11/26 (42%), Positives = 11/26 (42%)
 Frame = +3

Query: 684 PPXCFXPXPPPXLXXXXXXXXPPPPP 761
           PP    P PPP          PPPPP
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPP 30


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 14/45 (31%), Positives = 14/45 (31%)
 Frame = +3

Query: 633  PXGXGPPXKKTXFXXPXPPXCFXPXPPPXLXXXXXXXXPPPPPXP 767
            P    PP        P PP    P PP            PPPP P
Sbjct: 1694 PQSAAPPQMSAP--TPPPPPMSVPPPPSAPPMPAGPPSAPPPPLP 1736


>SPAC26A3.08 |smb1|smb|Sm snRNP core protein
           Smb1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 147

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 14/40 (35%), Positives = 17/40 (42%)
 Frame = +3

Query: 597 PAKRGRIXFSFSPXGXGPPXKKTXFXXPXPPXCFXPXPPP 716
           PA RG I    +P G   P +   +  P PP  F    PP
Sbjct: 103 PAGRG-IPLGQAPVGLAGPVRGVGYTAPPPPAGFGRGAPP 141


>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 379

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = -3

Query: 795 GGGGXGGGXXGXGG 754
           GGGG GGG  G GG
Sbjct: 135 GGGGMGGGMGGMGG 148


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,189,107
Number of Sequences: 5004
Number of extensions: 30285
Number of successful extensions: 258
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 519268360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)