Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP10_F_F18
(858 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|ch... 38 0.002
SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces ... 37 0.004
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 33 0.039
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 31 0.16
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 31 0.16
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 30 0.48
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 29 0.64
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 28 1.5
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 28 2.0
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 27 2.6
SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces pomb... 26 6.0
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 26 7.9
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb... 26 7.9
SPBC800.09 |sum2||G2/M transition checkpoint protein Sum2|Schizo... 26 7.9
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz... 26 7.9
>SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 274
Score = 37.5 bits (83), Expect = 0.002
Identities = 30/111 (27%), Positives = 48/111 (43%), Gaps = 7/111 (6%)
Frame = +3
Query: 285 SNRSGGVQRGRNRGGITKSTNYSRGDVNST-----WKHDMFN--DFGERKLQRNSGTITT 443
S R G R + +T + + NS+ W+HD+ D R +
Sbjct: 23 SRRRGSQNRISKKSRLTYKFKRASKEHNSSPDDGPWQHDLDQEQDAHPRTTHLQKRQHSE 82
Query: 444 GPTKLLVSXLDFGVSDSDIXELFXEFGILKSASVHYDRSGRSLGTADVVFE 596
+ V L + V + D+ LF F ++ ++YDR+GRS G+ DV FE
Sbjct: 83 NRFGVRVENLHYQVLEKDVLSLFENFHPIR-VIMNYDRAGRSEGSCDVYFE 132
>SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 199
Score = 36.7 bits (81), Expect = 0.004
Identities = 18/57 (31%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Frame = +3
Query: 432 TITTGPTKLLVSXLDFGVSDSDIXELFXE-FGILKSASVHYDRSGRSLGTADVVFEK 599
++ + +K++VS L V+++ + ELF + G K S+ Y +GRS G A ++F +
Sbjct: 49 SVISEESKIIVSNLPTDVTEAQVKELFVKSIGPCKRVSLAYGPNGRSKGIATIIFSR 105
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 33.5 bits (73), Expect = 0.039
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = +3
Query: 456 LLVSXLDFGVSDSDIXELFXEFGILKSASVHYDRSGRSLGTADVVFEKK 602
+ V L + SD ++ +LF + G + A + Y+ +GRS G V FE +
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEPTGRSKGFGVVQFENE 330
Score = 26.2 bits (55), Expect = 6.0
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +3
Query: 471 LDFGVSDSDIXELFXEFGILKSASVHYDRSGRSLGTADVV 590
L + V D+ +LF + G + A + ++ GRS G VV
Sbjct: 190 LPYNVRWQDLKDLFRQAGSVIRADIQMNQEGRSRGIGIVV 229
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 31.5 bits (68), Expect = 0.16
Identities = 22/52 (42%), Positives = 25/52 (48%)
Frame = +3
Query: 210 RIGGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGGITKSTNYSRGDV 365
R GGG+ R G GG GF G RGR RGG +S N +RG V
Sbjct: 444 RTGGGS-----RGGRGGFGGRGGFGGRGGFGGGRGRGRGG-ARSGNPNRGSV 489
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 31.5 bits (68), Expect = 0.16
Identities = 16/50 (32%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Frame = +3
Query: 456 LLVSXLDFGVSDSDIXELFXEFGILKSASVHYDR-SGRSLGTADVVFEKK 602
+ +S L + +SDI F +G ++ V ++ +G+S+G A VVFE++
Sbjct: 102 MFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFERE 151
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 29.9 bits (64), Expect = 0.48
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Frame = +3
Query: 159 DQIEMALDDIIKANK---KTRIGGGAGRKFDANKRTGRGGGAGFRSNRSG--GVQRGRNR 323
D++ ++ D +I ++ K + G K N GRGG GFR R G G G +R
Sbjct: 100 DKVYLSGDKLIPLDRFLPKPKTVGPKKPKGARNGPAGRGGRGGFRGGRGGSRGGFGGNSR 159
Query: 324 GG 329
GG
Sbjct: 160 GG 161
Score = 28.7 bits (61), Expect = 1.1
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 5/42 (11%)
Frame = +3
Query: 219 GGAGRKFDANKRTGRGGGA--GFRSNRSGGVQ---RGRNRGG 329
GG+ F N R G GGG+ GF GG + RG +RGG
Sbjct: 148 GGSRGGFGGNSRGGFGGGSRGGFGGGSRGGSRGGFRGGSRGG 189
Score = 27.5 bits (58), Expect = 2.6
Identities = 18/38 (47%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +3
Query: 219 GGAGRKFDANKRTGRGGG-AGFRSNRSGGVQRGRNRGG 329
G AGR R GRGG GF N GG G +RGG
Sbjct: 133 GPAGRGGRGGFRGGRGGSRGGFGGNSRGGF-GGGSRGG 169
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 29.5 bits (63), Expect = 0.64
Identities = 17/36 (47%), Positives = 18/36 (50%)
Frame = +3
Query: 222 GAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGG 329
G GR R GRGG G R SGG RG +GG
Sbjct: 37 GGGRGGARGGRGGRGGARGGRGGSSGG--RGGAKGG 70
Score = 26.2 bits (55), Expect = 6.0
Identities = 13/33 (39%), Positives = 15/33 (45%)
Frame = +3
Query: 210 RIGGGAGRKFDANKRTGRGGGAGFRSNRSGGVQ 308
R G GR R GRGG +G R GG +
Sbjct: 40 RGGARGGRGGRGGARGGRGGSSGGRGGAKGGAK 72
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 28.3 bits (60), Expect = 1.5
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Frame = +3
Query: 198 NKKTRIGGGAGRK--FDANKRTGRGGGAGFRSNRSGGVQR 311
N+ GGG GR+ + + G G G+R+NR G R
Sbjct: 78 NRGGHYGGGEGRQNNYRGGREGGYSNGGGYRNNRGFGQWR 117
Score = 25.8 bits (54), Expect = 7.9
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +3
Query: 228 GRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGG 329
G + + N+ GGG G ++N GG + G + GG
Sbjct: 72 GGRREYNRGGHYGGGEGRQNNYRGGREGGYSNGG 105
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 27.9 bits (59), Expect = 2.0
Identities = 13/56 (23%), Positives = 28/56 (50%)
Frame = +3
Query: 408 RKLQRNSGTITTGPTKLLVSXLDFGVSDSDIXELFXEFGILKSASVHYDRSGRSLG 575
R+ Q + T + + LD +++ + +LF +FG + S S+ D++ + G
Sbjct: 247 RERQSKVEALKANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRG 302
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 27.5 bits (58), Expect = 2.6
Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +3
Query: 456 LLVSXLDFGVSDSDIXELFXEFGILKSASVHYDR-SGRSLGTADVVFE 596
+ + LDF +++ DI +F EFG ++ D+ +G+S G A + +E
Sbjct: 33 IYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYE 80
>SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 827
Score = 26.2 bits (55), Expect = 6.0
Identities = 21/89 (23%), Positives = 33/89 (37%)
Frame = +3
Query: 162 QIEMALDDIIKANKKTRIGGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGGITKS 341
Q + L D +K +GG + + RG G R G + RNR G
Sbjct: 48 QSDFNLFDRQFTKRKFDVGGRRVKGTEGKPGVSRGVGEELRRRTIGAELKKRNRSGAIID 107
Query: 342 TNYSRGDVNSTWKHDMFNDFGERKLQRNS 428
+ + + + + M F R+ QR S
Sbjct: 108 RRFGENNPHLSVEEKMLERF-SREQQRRS 135
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 25.8 bits (54), Expect = 7.9
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +3
Query: 456 LLVSXLDFGVSDSDIXELFXEFG-ILKSASVHYDRSGRSLGTADVVF 593
L V LDF +D+D+ E F + G I + + ++ +G+ G V F
Sbjct: 230 LFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDF 276
>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1778
Score = 25.8 bits (54), Expect = 7.9
Identities = 25/74 (33%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Frame = +3
Query: 222 GAGRKFDANKRTGRGGGAGFRSNR-SGGVQRGRNRGGITKSTNYSRGDVNSTWKHDMFND 398
G G F +N T G G+G +N SGG+ N T ST G + K F+
Sbjct: 282 GGGSAFGSNT-TNTGFGSG--TNNASGGLFGQNNNTTSTPSTGLFGGSTFNQQK-PAFSG 337
Query: 399 FGERKLQRNSGTIT 440
FG N+GT T
Sbjct: 338 FGSTTNTTNTGTGT 351
>SPBC800.09 |sum2||G2/M transition checkpoint protein
Sum2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 25.8 bits (54), Expect = 7.9
Identities = 16/46 (34%), Positives = 20/46 (43%)
Frame = +3
Query: 231 RKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGGITKSTNYSRGDVN 368
R+ N T G+G R R RGR RGG + Y+R N
Sbjct: 367 RERSLNMETFGVAGSGNRGRRG----RGRGRGGRGRGRGYARNQYN 408
>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1273
Score = 25.8 bits (54), Expect = 7.9
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -3
Query: 649 HQVXSXILXHSLHSXXFFSNTTSAVPKDLPDRS 551
H + I H+ +S SN+TS PKD+ D S
Sbjct: 568 HTSATQINHHTSNSNSISSNSTSLNPKDVTDPS 600
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,984,645
Number of Sequences: 5004
Number of extensions: 56973
Number of successful extensions: 151
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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