Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP10_F_F16
(850 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_03_0180 - 16031366-16031445,16031950-16032022,16032148-160321... 33 0.22
03_01_0513 - 3853956-3854363 29 4.7
06_03_0596 + 22608835-22610263,22610411-22610531,22610765-226118... 29 6.2
06_03_0588 + 22567820-22570802,22570917-22571269 29 6.2
11_06_0458 + 23808402-23808469,23808800-23809684,23810011-238119... 28 8.2
07_03_1201 + 24791588-24792619 28 8.2
06_03_0587 + 22555414-22557231 28 8.2
03_02_0018 - 5016752-5017288 28 8.2
01_06_0506 + 29887343-29887686,29889965-29890265,29890385-298906... 28 8.2
>02_03_0180 - 16031366-16031445,16031950-16032022,16032148-16032186,
16032434-16032715,16032790-16032948,16033034-16033390,
16033482-16033622,16033919-16034045,16034121-16034263,
16034740-16034917,16035019-16035552,16035628-16035812,
16036551-16036637,16036710-16036850,16036896-16037175,
16037944-16038020,16038326-16039138,16039292-16039801,
16039926-16040056,16040192-16040246,16040364-16040564,
16040640-16040909,16041103-16041184,16041271-16041434,
16041532-16041690,16041762-16042083,16042158-16042544,
16042811-16042999,16043233-16043317,16043458-16043753,
16043862-16043965,16044484-16044513,16044602-16044817,
16044923-16045540,16045718-16045993,16046619-16046762,
16046854-16046962,16047291-16047475,16047557-16047670,
16048348-16048479,16048929-16049249,16049424-16049891,
16054482-16054547,16054691-16054828,16054917-16055015,
16057098-16057194,16057661-16057761,16057858-16058085,
16059175-16059381,16059451-16059571,16059921-16059988,
16060148-16060213,16060396-16060509,16060949-16061300,
16063571-16063663,16063764-16063922,16064224-16064287,
16064385-16064577,16064673-16064710,16065510-16065645,
16065726-16065914,16065994-16066095,16067660-16067777,
16067861-16067964,16070338-16070346,16071428-16071475,
16071581-16071676,16072430-16072533,16073964-16074045,
16076573-16076601,16076708-16076963
Length = 4246
Score = 33.5 bits (73), Expect = 0.22
Identities = 20/69 (28%), Positives = 38/69 (55%), Gaps = 8/69 (11%)
Frame = +2
Query: 122 LFELEKGKYVTTDTYEAHVWVIPAKEVVVCTDKRILYLE----KNNVFG----GWQIVWT 277
LF++ +GK+ +TD YE H +++P ++++ T +R+L L+ F ++W
Sbjct: 4053 LFKV-RGKFASTDAYEDH-FMLPKGKILLITHRRVLLLQVPMMTQRKFSPAKDPCSVIWD 4110
Query: 278 YLWTELPEV 304
LW +L V
Sbjct: 4111 VLWDDLVTV 4119
>03_01_0513 - 3853956-3854363
Length = 135
Score = 29.1 bits (62), Expect = 4.7
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +2
Query: 26 YRESLRFFAARYLPPDTG-VRPYSRSQAEGYKMLFELEKGKYVTTDTYEAHVWVIP 190
YR+ R + RY+ +G +PY+ Y+++ + G T Y+A VW IP
Sbjct: 66 YRQITRLYFLRYVNVVSGQTQPYNGGY--NYRLVVTVYGGPNWKTTLYDADVWGIP 119
>06_03_0596 +
22608835-22610263,22610411-22610531,22610765-22611864,
22611969-22612327
Length = 1002
Score = 28.7 bits (61), Expect = 6.2
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +3
Query: 204 WSAPTKEFCIWRRITCS 254
WS ++EFC W +TCS
Sbjct: 55 WSNASQEFCNWHGVTCS 71
>06_03_0588 + 22567820-22570802,22570917-22571269
Length = 1111
Score = 28.7 bits (61), Expect = 6.2
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +3
Query: 204 WSAPTKEFCIWRRITCS 254
WS + EFC W ITCS
Sbjct: 56 WSNASMEFCSWHGITCS 72
>11_06_0458 + 23808402-23808469,23808800-23809684,23810011-23811961,
23812210-23812285,23813064-23813072,23813243-23813335,
23813578-23813581,23813780-23814703,23814926-23815909,
23816073-23816118,23816376-23816951,23817253-23817798,
23817820-23818416
Length = 2252
Score = 28.3 bits (60), Expect = 8.2
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +2
Query: 107 EGYKMLFELEKGKYVTTDTYEAHVWVIPAKEVVV 208
EG ++ EL+ G TT T+ AH WV+ A+ V+
Sbjct: 2083 EGADVVIELDGGDGETT-TFHAHRWVLAARSPVL 2115
>07_03_1201 + 24791588-24792619
Length = 343
Score = 28.3 bits (60), Expect = 8.2
Identities = 20/70 (28%), Positives = 31/70 (44%)
Frame = -2
Query: 384 PEPELENIPSTFFLAVGM*TPLLTGDGTSGSSVHR*VQTICQPPNTLFFSKYKILLSVQT 205
P P L N + + L + ++ GDG G V IC+ P + S Y + +Q
Sbjct: 141 PSPRLINTHTPYQL---LPESVVAGDGGGGCKV----VYICRDPKDMVVSLYHFMRRLQP 193
Query: 204 TTSLAGITHT 175
SLAG+ +
Sbjct: 194 DLSLAGVVES 203
>06_03_0587 + 22555414-22557231
Length = 605
Score = 28.3 bits (60), Expect = 8.2
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +3
Query: 204 WSAPTKEFCIWRRITCS 254
WS + EFC W +TCS
Sbjct: 57 WSNASMEFCSWHGVTCS 73
>03_02_0018 - 5016752-5017288
Length = 178
Score = 28.3 bits (60), Expect = 8.2
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +3
Query: 198 RWWSAPTKEFCIWRRITCSGVGRSSGLTYGPNCR 299
R W+A + +W + VG +SG T GP R
Sbjct: 61 RLWAAVARRDAVWEALCLRHVGPASGPTAGPATR 94
>01_06_0506 +
29887343-29887686,29889965-29890265,29890385-29890677,
29890783-29891069,29891171-29891400
Length = 484
Score = 28.3 bits (60), Expect = 8.2
Identities = 17/62 (27%), Positives = 31/62 (50%)
Frame = +2
Query: 278 YLWTELPEVPSPVNKGVYIPTAKKKVLGMFSSSGSGKVILLFDEQQKKYLLTQCQRLMSS 457
Y W L +P+P ++ V + TA K L + S G ++ ++ K+ L Q +M +
Sbjct: 280 YYWPHLTHIPAPADEDVMLFTASK--LSGHAGSRFGWALIRDEKVAKRALSYVEQSIMGA 337
Query: 458 AR 463
+R
Sbjct: 338 SR 339
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,558,413
Number of Sequences: 37544
Number of extensions: 452759
Number of successful extensions: 1224
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1223
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2362209084
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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