Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP10_F_F16
(850 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL359204-2|CAI39538.1| 3174|Homo sapiens vacuolar protein sortin... 51 6e-06
AL353710-2|CAH74106.1| 3174|Homo sapiens vacuolar protein sortin... 51 6e-06
AL158159-2|CAI40936.1| 3174|Homo sapiens vacuolar protein sortin... 51 6e-06
AK022967-1|BAB14337.1| 975|Homo sapiens protein ( Homo sapiens ... 51 6e-06
AJ608769-1|CAE75581.1| 3135|Homo sapiens chorein 2A protein. 51 6e-06
AF337532-1|AAK61861.1| 3174|Homo sapiens chorea-acanthocytosis p... 51 6e-06
AK057444-1|BAB71489.1| 602|Homo sapiens protein ( Homo sapiens ... 35 0.43
AF356185-1|AAK39108.1| 565|Homo sapiens autoimmune infertility-... 35 0.43
BC069387-1|AAH69387.1| 449|Homo sapiens VPS13C protein protein. 34 0.57
AK000143-1|BAA90972.1| 442|Homo sapiens protein ( Homo sapiens ... 34 0.57
AJ608771-1|CAE75583.1| 3753|Homo sapiens VPS13C-2A protein protein. 34 0.57
AJ608770-1|CAE75582.1| 3710|Homo sapiens VPS13C-1A protein protein. 34 0.57
AF417165-1|AAL11910.1| 610|Homo sapiens cytosolic nucleotidase ... 31 4.0
>AL359204-2|CAI39538.1| 3174|Homo sapiens vacuolar protein sorting 13
homolog A (S. cerevisiae) protein.
Length = 3174
Score = 50.8 bits (116), Expect = 6e-06
Identities = 38/137 (27%), Positives = 66/137 (48%)
Frame = +2
Query: 32 ESLRFFAARYLPPDTGVRPYSRSQAEGYKMLFELEKGKYVTTDTYEAHVWVIPAKEVVVC 211
ESLR R+ D +RPY G +ML +E G++ Y HV +I ++++
Sbjct: 3034 ESLR--PPRFFNEDGVIRPYRLRDGTGNQMLQVMENGRFAKYK-YFTHV-MINKTDMLMI 3089
Query: 212 TDKRILYLEKNNVFGGWQIVWTYLWTELPEVPSPVNKGVYIPTAKKKVLGMFSSSGSGKV 391
T + +L++ K FG W Y + E + P V+ AK++V +F + GK+
Sbjct: 3090 TRRGVLFVTKGT-FGQLTCEWQYSFDEFTKEPFIVHGRRLRIEAKERVKSVFHAREFGKI 3148
Query: 392 ILLFDEQQKKYLLTQCQ 442
I + +++LT+ Q
Sbjct: 3149 INFKTPEDARWILTKLQ 3165
>AL353710-2|CAH74106.1| 3174|Homo sapiens vacuolar protein sorting 13
homolog A (S. cerevisiae) protein.
Length = 3174
Score = 50.8 bits (116), Expect = 6e-06
Identities = 38/137 (27%), Positives = 66/137 (48%)
Frame = +2
Query: 32 ESLRFFAARYLPPDTGVRPYSRSQAEGYKMLFELEKGKYVTTDTYEAHVWVIPAKEVVVC 211
ESLR R+ D +RPY G +ML +E G++ Y HV +I ++++
Sbjct: 3034 ESLR--PPRFFNEDGVIRPYRLRDGTGNQMLQVMENGRFAKYK-YFTHV-MINKTDMLMI 3089
Query: 212 TDKRILYLEKNNVFGGWQIVWTYLWTELPEVPSPVNKGVYIPTAKKKVLGMFSSSGSGKV 391
T + +L++ K FG W Y + E + P V+ AK++V +F + GK+
Sbjct: 3090 TRRGVLFVTKGT-FGQLTCEWQYSFDEFTKEPFIVHGRRLRIEAKERVKSVFHAREFGKI 3148
Query: 392 ILLFDEQQKKYLLTQCQ 442
I + +++LT+ Q
Sbjct: 3149 INFKTPEDARWILTKLQ 3165
>AL158159-2|CAI40936.1| 3174|Homo sapiens vacuolar protein sorting 13
homolog A (S. cerevisiae) protein.
Length = 3174
Score = 50.8 bits (116), Expect = 6e-06
Identities = 38/137 (27%), Positives = 66/137 (48%)
Frame = +2
Query: 32 ESLRFFAARYLPPDTGVRPYSRSQAEGYKMLFELEKGKYVTTDTYEAHVWVIPAKEVVVC 211
ESLR R+ D +RPY G +ML +E G++ Y HV +I ++++
Sbjct: 3034 ESLR--PPRFFNEDGVIRPYRLRDGTGNQMLQVMENGRFAKYK-YFTHV-MINKTDMLMI 3089
Query: 212 TDKRILYLEKNNVFGGWQIVWTYLWTELPEVPSPVNKGVYIPTAKKKVLGMFSSSGSGKV 391
T + +L++ K FG W Y + E + P V+ AK++V +F + GK+
Sbjct: 3090 TRRGVLFVTKGT-FGQLTCEWQYSFDEFTKEPFIVHGRRLRIEAKERVKSVFHAREFGKI 3148
Query: 392 ILLFDEQQKKYLLTQCQ 442
I + +++LT+ Q
Sbjct: 3149 INFKTPEDARWILTKLQ 3165
>AK022967-1|BAB14337.1| 975|Homo sapiens protein ( Homo sapiens cDNA
FLJ12905 fis, clone NT2RP2004366, weakly similar to
VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS13. ).
Length = 975
Score = 50.8 bits (116), Expect = 6e-06
Identities = 38/137 (27%), Positives = 66/137 (48%)
Frame = +2
Query: 32 ESLRFFAARYLPPDTGVRPYSRSQAEGYKMLFELEKGKYVTTDTYEAHVWVIPAKEVVVC 211
ESLR R+ D +RPY G +ML +E G++ Y HV +I ++++
Sbjct: 835 ESLR--PPRFFNEDGVIRPYRLRDGTGNQMLQVMENGRFAKYK-YFTHV-MINKTDMLMI 890
Query: 212 TDKRILYLEKNNVFGGWQIVWTYLWTELPEVPSPVNKGVYIPTAKKKVLGMFSSSGSGKV 391
T + +L++ K FG W Y + E + P V+ AK++V +F + GK+
Sbjct: 891 TRRGVLFVTKGT-FGQLTCEWQYSFDEFTKEPFIVHGRRLRIEAKERVKSVFHAREFGKI 949
Query: 392 ILLFDEQQKKYLLTQCQ 442
I + +++LT+ Q
Sbjct: 950 INFKTPEDARWILTKLQ 966
>AJ608769-1|CAE75581.1| 3135|Homo sapiens chorein 2A protein.
Length = 3135
Score = 50.8 bits (116), Expect = 6e-06
Identities = 38/137 (27%), Positives = 66/137 (48%)
Frame = +2
Query: 32 ESLRFFAARYLPPDTGVRPYSRSQAEGYKMLFELEKGKYVTTDTYEAHVWVIPAKEVVVC 211
ESLR R+ D +RPY G +ML +E G++ Y HV +I ++++
Sbjct: 2995 ESLR--PPRFFNEDGVIRPYRLRDGTGNQMLQVMENGRFAKYK-YFTHV-MINKTDMLMI 3050
Query: 212 TDKRILYLEKNNVFGGWQIVWTYLWTELPEVPSPVNKGVYIPTAKKKVLGMFSSSGSGKV 391
T + +L++ K FG W Y + E + P V+ AK++V +F + GK+
Sbjct: 3051 TRRGVLFVTKGT-FGQLTCEWQYSFDEFTKEPFIVHGRRLRIEAKERVKSVFHAREFGKI 3109
Query: 392 ILLFDEQQKKYLLTQCQ 442
I + +++LT+ Q
Sbjct: 3110 INFKTPEDARWILTKLQ 3126
>AF337532-1|AAK61861.1| 3174|Homo sapiens chorea-acanthocytosis
protein.
Length = 3174
Score = 50.8 bits (116), Expect = 6e-06
Identities = 38/137 (27%), Positives = 66/137 (48%)
Frame = +2
Query: 32 ESLRFFAARYLPPDTGVRPYSRSQAEGYKMLFELEKGKYVTTDTYEAHVWVIPAKEVVVC 211
ESLR R+ D +RPY G +ML +E G++ Y HV +I ++++
Sbjct: 3034 ESLR--PPRFFNEDGVIRPYRLRDGTGNQMLQVMENGRFAKYK-YFTHV-MINKTDMLMI 3089
Query: 212 TDKRILYLEKNNVFGGWQIVWTYLWTELPEVPSPVNKGVYIPTAKKKVLGMFSSSGSGKV 391
T + +L++ K FG W Y + E + P V+ AK++V +F + GK+
Sbjct: 3090 TRRGVLFVTKGT-FGQLTCEWQYSFDEFTKEPFIVHGRRLRIEAKERVKSVFHAREFGKI 3148
Query: 392 ILLFDEQQKKYLLTQCQ 442
I + +++LT+ Q
Sbjct: 3149 INFKTPEDARWILTKLQ 3165
>AK057444-1|BAB71489.1| 602|Homo sapiens protein ( Homo sapiens
cDNA FLJ32882 fis, clone TESTI2004207, moderately
similar to Columba livia mRNA for 5'-nucleotidase. ).
Length = 602
Score = 34.7 bits (76), Expect = 0.43
Identities = 32/115 (27%), Positives = 49/115 (42%), Gaps = 2/115 (1%)
Frame = -3
Query: 374 NSRTFLVLSSWLWECKRPC*QATALPAVRSIGKSRRSANPRTRYSSPNTKFFCRCRPPPP 195
+SR +LV S W + P +A ++ RS S + + T +P+T PPP
Sbjct: 111 DSRGYLVRSQWSRISRSPSTKAPSIDEPRSRNTSAKLPSSSTSSRTPSTSPSLHDSSPPP 170
Query: 194 WLGSPTRELRTCP-*SRIYPSRVRTTFYNLRPEISSKASLRYRE-AGTWRQKILR 36
G P+ + P R SR T P+ S+ S + +E W Q I+R
Sbjct: 171 LSGQPSLQPPASPQLPRSLDSRPPTP---PEPDPGSRRSTKMQENPEAWAQGIVR 222
>AF356185-1|AAK39108.1| 565|Homo sapiens autoimmune
infertility-related protein protein.
Length = 565
Score = 34.7 bits (76), Expect = 0.43
Identities = 32/115 (27%), Positives = 49/115 (42%), Gaps = 2/115 (1%)
Frame = -3
Query: 374 NSRTFLVLSSWLWECKRPC*QATALPAVRSIGKSRRSANPRTRYSSPNTKFFCRCRPPPP 195
+SR +LV S W + P +A ++ RS S + + T +P+T PPP
Sbjct: 66 DSRGYLVRSQWSRISRSPSTKAPSIDEPRSRNTSAKLPSSSTSSRTPSTSPSLHDSSPPP 125
Query: 194 WLGSPTRELRTCP-*SRIYPSRVRTTFYNLRPEISSKASLRYRE-AGTWRQKILR 36
G P+ + P R SR T P+ S+ S + +E W Q I+R
Sbjct: 126 LSGQPSLQPPASPQLPRSLDSRPPTP---PEPDPGSRRSTKMQENPEAWAQGIVR 177
>BC069387-1|AAH69387.1| 449|Homo sapiens VPS13C protein protein.
Length = 449
Score = 34.3 bits (75), Expect = 0.57
Identities = 29/111 (26%), Positives = 55/111 (49%), Gaps = 2/111 (1%)
Frame = +2
Query: 56 RYLPPDTGVRPYSRSQAEGYKMLFELEKGKYVTTDTYEAHVWVIPA--KEVVVCTDKRIL 229
R + D +RPY R ++EG +L K + +TY H IP K +++ T++R+L
Sbjct: 294 RLIHEDGIIRPYDRQESEGSDLL--ENHIKKLEGETYRYHC-AIPGSKKTILMVTNRRVL 350
Query: 230 YLEKNNVFGGWQIVWTYLWTELPEVPSPVNKGVYIPTAKKKVLGMFSSSGS 382
+++ + G + W + + PS V++ V + K++ G+F S
Sbjct: 351 CIKEVEILGLMCVDWQCPFEDFVFPPS-VSENVLKISVKEQ--GLFHKKDS 398
>AK000143-1|BAA90972.1| 442|Homo sapiens protein ( Homo sapiens
cDNA FLJ20136 fis, clone COL07068. ).
Length = 442
Score = 34.3 bits (75), Expect = 0.57
Identities = 29/111 (26%), Positives = 55/111 (49%), Gaps = 2/111 (1%)
Frame = +2
Query: 56 RYLPPDTGVRPYSRSQAEGYKMLFELEKGKYVTTDTYEAHVWVIPA--KEVVVCTDKRIL 229
R + D +RPY R ++EG +L K + +TY H IP K +++ T++R+L
Sbjct: 287 RLIHEDGIIRPYDRQESEGSDLL--ENHIKKLEGETYRYHC-AIPGSKKTILMVTNRRVL 343
Query: 230 YLEKNNVFGGWQIVWTYLWTELPEVPSPVNKGVYIPTAKKKVLGMFSSSGS 382
+++ + G + W + + PS V++ V + K++ G+F S
Sbjct: 344 CIKEVEILGLMCVDWQCPFEDFVFPPS-VSENVLKISVKEQ--GLFHKKDS 391
>AJ608771-1|CAE75583.1| 3753|Homo sapiens VPS13C-2A protein protein.
Length = 3753
Score = 34.3 bits (75), Expect = 0.57
Identities = 29/111 (26%), Positives = 55/111 (49%), Gaps = 2/111 (1%)
Frame = +2
Query: 56 RYLPPDTGVRPYSRSQAEGYKMLFELEKGKYVTTDTYEAHVWVIPA--KEVVVCTDKRIL 229
R + D +RPY R ++EG +L K + +TY H IP K +++ T++R+L
Sbjct: 3598 RLIHEDGIIRPYDRQESEGSDLL--ENHIKKLEGETYRYHC-AIPGSKKTILMVTNRRVL 3654
Query: 230 YLEKNNVFGGWQIVWTYLWTELPEVPSPVNKGVYIPTAKKKVLGMFSSSGS 382
+++ + G + W + + PS V++ V + K++ G+F S
Sbjct: 3655 CIKEVEILGLMCVDWQCPFEDFVFPPS-VSENVLKISVKEQ--GLFHKKDS 3702
>AJ608770-1|CAE75582.1| 3710|Homo sapiens VPS13C-1A protein protein.
Length = 3710
Score = 34.3 bits (75), Expect = 0.57
Identities = 29/111 (26%), Positives = 55/111 (49%), Gaps = 2/111 (1%)
Frame = +2
Query: 56 RYLPPDTGVRPYSRSQAEGYKMLFELEKGKYVTTDTYEAHVWVIPA--KEVVVCTDKRIL 229
R + D +RPY R ++EG +L K + +TY H IP K +++ T++R+L
Sbjct: 3555 RLIHEDGIIRPYDRQESEGSDLL--ENHIKKLEGETYRYHC-AIPGSKKTILMVTNRRVL 3611
Query: 230 YLEKNNVFGGWQIVWTYLWTELPEVPSPVNKGVYIPTAKKKVLGMFSSSGS 382
+++ + G + W + + PS V++ V + K++ G+F S
Sbjct: 3612 CIKEVEILGLMCVDWQCPFEDFVFPPS-VSENVLKISVKEQ--GLFHKKDS 3659
>AF417165-1|AAL11910.1| 610|Homo sapiens cytosolic nucleotidase Ib
alpha protein.
Length = 610
Score = 31.5 bits (68), Expect = 4.0
Identities = 31/115 (26%), Positives = 48/115 (41%), Gaps = 2/115 (1%)
Frame = -3
Query: 374 NSRTFLVLSSWLWECKRPC*QATALPAVRSIGKSRRSANPRTRYSSPNTKFFCRCRPPPP 195
+SR +LV S W + P +A ++ RS S + + T +P+T PPP
Sbjct: 111 DSRGYLVRSQWSRISRSPSTKAPSIDEPRSRNTSAKLPSSSTSSRTPSTSPSLHDSSPPP 170
Query: 194 WLGSPTRELRTCP-*SRIYPSRVRTTFYNLRPEISSKASLRYRE-AGTWRQKILR 36
P+ + P R SR T P+ S+ S + +E W Q I+R
Sbjct: 171 LSRQPSLQPPASPQLPRSLDSRPPTP---PEPDPGSRRSTKMQENPEAWAQGIVR 222
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,366,661
Number of Sequences: 237096
Number of extensions: 2439569
Number of successful extensions: 8624
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 8488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8624
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10761200974
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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