Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_F15
         (895 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    42   2e-04
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei...    33   0.041
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    30   0.39 
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo...    29   1.2  
SPAC15A10.13 |ppk3||serine/threonine protein kinase Ppk3|Schizos...    28   1.6  
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    28   2.1  
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    27   2.7  
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce...    26   6.3  
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po...    26   6.3  
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po...    26   8.3  
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce...    26   8.3  
SPAC8E11.07c |alp31||tubulin specific chaperone cofactor A |Schi...    26   8.3  

>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 243

 Score = 41.5 bits (93), Expect = 2e-04
 Identities = 20/49 (40%), Positives = 29/49 (59%)
 Frame = +3

Query: 591 IHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNGRGYAYVELI 737
           I +  LT NVT++HI EIF  YG +  I  P+ +    N +GY Y+E +
Sbjct: 101 ILVENLTRNVTKEHIAEIFGIYGLIDHIFMPIYKKSELN-KGYCYIEYV 148


>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
           Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 348

 Score = 33.5 bits (73), Expect = 0.041
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +3

Query: 588 RIHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRL 695
           R+ +GRL+ +  +  I  +F T GTV+ +  P  R+
Sbjct: 45  RVFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRV 80


>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 30.3 bits (65), Expect = 0.39
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = +3

Query: 591 IHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNGRGYAYVE 731
           + +GRL+ NV    + + F  YGT+      MD       +GY YV+
Sbjct: 265 VFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDG-QSGRSKGYGYVD 310


>SPBC13A2.01c |||nuclear cap-binding complex small
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 182

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = +3

Query: 591 IHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNGRGYAYVE 731
           +++G L+   T + I+ +FS  G ++ I   +DR       G+ +VE
Sbjct: 34  VYVGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRF-TKTPCGFCFVE 79


>SPAC15A10.13 |ppk3||serine/threonine protein kinase
           Ppk3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 637

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +3

Query: 462 SPTGDKKKSVLPLSNDKAKIKEKQ 533
           SP+ D KK  L L ND  +IKEK+
Sbjct: 562 SPSIDMKKESLELKNDTTEIKEKK 585


>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 422

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 13/49 (26%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = +3

Query: 591 IHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNG--RGYAYVE 731
           +++G +   +  + + +IF   G VKS +  +D   P +G  +GY + E
Sbjct: 7   VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVID---PESGQPKGYGFCE 52


>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 661

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 591 IHIGRLTLNVTRDHIHEIFSTYGTVKSI 674
           +++  L +  +   IH +FS YG VK I
Sbjct: 2   LYVSNLPVGTSSSAIHALFSAYGNVKDI 29


>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 604

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 10/44 (22%), Positives = 21/44 (47%)
 Frame = +3

Query: 588 RIHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNGRGY 719
           R+ +  +  N+T + +  IF  +G ++ +    D  +   G GY
Sbjct: 341 RLCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQNRSKGFGY 384


>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1014

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +3

Query: 633 IHEIFSTYGTVKSIEFPMDRLHPHNGRGYAYVEL 734
           I ++FS YG V  + FP   L  +  R + YV++
Sbjct: 682 ITKLFSAYGNVVDVRFP--SLRYNTNRRFCYVQM 713


>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 365

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +3

Query: 585 TRIHIGRLTLNVTRDHIHEIFSTYGTV 665
           TR+ +GR+    TR+ + + F  YG +
Sbjct: 4   TRLFVGRIPPQATREDMMDFFKGYGQI 30


>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 217

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = +3

Query: 591 IHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNGRGYAYVE 731
           I+IG L  ++  D I  +FS +G    I    D+      +G+A+++
Sbjct: 33  IYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDK-ETGKSKGFAFLK 78


>SPAC8E11.07c |alp31||tubulin specific chaperone cofactor A
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 119

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = +1

Query: 454 EIDHQQETKKNLCYLYQMTKLKLRKNRNDLQDVRSENAHHHHDQL 588
           EI+HQ+   K          ++LR   NDL+ + S++A+    +L
Sbjct: 48  EIEHQKFVLKKHLEALPDALVRLRNATNDLESISSDSAYEGTPEL 92


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,809,979
Number of Sequences: 5004
Number of extensions: 50218
Number of successful extensions: 151
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)