Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP10_F_F15
(895 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna b... 62 5e-10
Z32683-11|CAA83626.1| 142|Caenorhabditis elegans Hypothetical p... 33 0.36
Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical pr... 31 0.84
Z50874-3|CAA90773.1| 409|Caenorhabditis elegans Hypothetical pr... 31 1.1
Z50874-2|CAA90772.1| 357|Caenorhabditis elegans Hypothetical pr... 31 1.1
U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna bi... 31 1.5
Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical pr... 29 3.4
Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical pr... 29 3.4
Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical pr... 29 3.4
Z49911-12|CAD30448.1| 137|Caenorhabditis elegans Hypothetical p... 29 3.4
Z49911-11|CAA90135.2| 452|Caenorhabditis elegans Hypothetical p... 29 3.4
Z36948-7|CAD30436.1| 137|Caenorhabditis elegans Hypothetical pr... 29 3.4
Z36948-6|CAA85414.2| 452|Caenorhabditis elegans Hypothetical pr... 29 3.4
Z82060-3|CAB04883.1| 206|Caenorhabditis elegans Hypothetical pr... 29 5.9
AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical... 29 5.9
AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein. 29 5.9
Z92822-7|CAH10786.1| 601|Caenorhabditis elegans Hypothetical pr... 28 7.8
Z83244-9|CAH10804.1| 601|Caenorhabditis elegans Hypothetical pr... 28 7.8
Z83244-1|CAB05827.2| 634|Caenorhabditis elegans Hypothetical pr... 28 7.8
U64841-1|AAB04845.2| 357|Caenorhabditis elegans Serpentine rece... 28 7.8
U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein (spl... 28 7.8
U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein (spl... 28 7.8
AF145376-1|AAD39815.1| 634|Caenorhabditis elegans LIT-1 protein. 28 7.8
AF022969-2|AAB69893.2| 354|Caenorhabditis elegans Hypothetical ... 28 7.8
>U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 5 protein.
Length = 289
Score = 62.1 bits (144), Expect = 5e-10
Identities = 30/69 (43%), Positives = 39/69 (56%)
Frame = +3
Query: 588 RIHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNGRGYAYVELIMLMKQKML*S 767
R+ I L+ NV + H+ EIFS YG +K+++ P DR H H RGY YVE L +
Sbjct: 134 RVVIKNLSRNVLKTHLEEIFSIYGAIKNVDLPPDRFHNHVHRGYGYVEYDNLEDAEKSIK 193
Query: 768 TWTGXQIDG 794
G QIDG
Sbjct: 194 HMDGGQIDG 202
>Z32683-11|CAA83626.1| 142|Caenorhabditis elegans Hypothetical
protein R07E5.14 protein.
Length = 142
Score = 32.7 bits (71), Expect = 0.36
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = +3
Query: 621 TRDHIHEIFSTYGTVKSIEFPMDRLHPHNGRGYAYVE 731
T D +H+ FS YG +K+I +DR +GYA VE
Sbjct: 67 TEDDVHDKFSEYGKIKNIHLNLDR-RTGFLKGYALVE 102
>Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical
protein T23F6.4 protein.
Length = 872
Score = 31.5 bits (68), Expect = 0.84
Identities = 13/51 (25%), Positives = 24/51 (47%)
Frame = +3
Query: 585 TRIHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNGRGYAYVELI 737
T++ + L + + +F T+G VK+I P RG+ +V+ I
Sbjct: 748 TKLLVRNLPFEASVKEVETLFETFGAVKTIRIPKKPGQKQQHRGFGFVDFI 798
>Z50874-3|CAA90773.1| 409|Caenorhabditis elegans Hypothetical
protein R10E4.2b protein.
Length = 409
Score = 31.1 bits (67), Expect = 1.1
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = +3
Query: 585 TRIHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNGRGYAYVE 731
T ++I L N D + E+ S YG + S + MD+ +N +GY +V+
Sbjct: 107 TNLYIRGLMPNTNDDLLREMCSKYGNIASTKAIMDKA-TNNCKGYGFVD 154
>Z50874-2|CAA90772.1| 357|Caenorhabditis elegans Hypothetical
protein R10E4.2a protein.
Length = 357
Score = 31.1 bits (67), Expect = 1.1
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = +3
Query: 585 TRIHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNGRGYAYVE 731
T ++I L N D + E+ S YG + S + MD+ +N +GY +V+
Sbjct: 81 TNLYIRGLMPNTNDDLLREMCSKYGNIASTKAIMDKA-TNNCKGYGFVD 128
>U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 7 protein.
Length = 332
Score = 30.7 bits (66), Expect = 1.5
Identities = 16/70 (22%), Positives = 29/70 (41%)
Frame = +3
Query: 591 IHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNGRGYAYVELIMLMKQKML*ST 770
+ +GR+ + + F YG +K + D RGYA++E +
Sbjct: 106 LFVGRINYETSESKLRREFEAYGKIKKLTMVHD--EAGKPRGYAFIEYSDKAEMHTAYKK 163
Query: 771 WTGXQIDGQR 800
G ++DG+R
Sbjct: 164 ADGIKVDGKR 173
>Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical
protein W02B12.3c protein.
Length = 150
Score = 29.5 bits (63), Expect = 3.4
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +3
Query: 588 RIHIGRLTLNVTRDHIHEIFSTYGTVKSI 674
RI+IGRLT V+ I F YG ++ +
Sbjct: 4 RIYIGRLTSRVSEKDIEHFFRGYGQIRDV 32
>Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical
protein W02B12.3b protein.
Length = 148
Score = 29.5 bits (63), Expect = 3.4
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +3
Query: 588 RIHIGRLTLNVTRDHIHEIFSTYGTVKSI 674
RI+IGRLT V+ I F YG ++ +
Sbjct: 4 RIYIGRLTSRVSEKDIEHFFRGYGQIRDV 32
>Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical
protein W02B12.3a protein.
Length = 312
Score = 29.5 bits (63), Expect = 3.4
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +3
Query: 588 RIHIGRLTLNVTRDHIHEIFSTYGTVKSI 674
RI+IGRLT V+ I F YG ++ +
Sbjct: 4 RIYIGRLTSRVSEKDIEHFFRGYGQIRDV 32
>Z49911-12|CAD30448.1| 137|Caenorhabditis elegans Hypothetical
protein D2089.1b protein.
Length = 137
Score = 29.5 bits (63), Expect = 3.4
Identities = 8/29 (27%), Positives = 20/29 (68%)
Frame = +3
Query: 591 IHIGRLTLNVTRDHIHEIFSTYGTVKSIE 677
+H+ ++ + TRDHI+ +F+ G ++ ++
Sbjct: 12 LHVANISTSATRDHIYNMFNYLGKIQDLK 40
>Z49911-11|CAA90135.2| 452|Caenorhabditis elegans Hypothetical
protein D2089.1a protein.
Length = 452
Score = 29.5 bits (63), Expect = 3.4
Identities = 8/29 (27%), Positives = 20/29 (68%)
Frame = +3
Query: 591 IHIGRLTLNVTRDHIHEIFSTYGTVKSIE 677
+H+ ++ + TRDHI+ +F+ G ++ ++
Sbjct: 12 LHVANISTSATRDHIYNMFNYLGKIQDLK 40
>Z36948-7|CAD30436.1| 137|Caenorhabditis elegans Hypothetical
protein D2089.1b protein.
Length = 137
Score = 29.5 bits (63), Expect = 3.4
Identities = 8/29 (27%), Positives = 20/29 (68%)
Frame = +3
Query: 591 IHIGRLTLNVTRDHIHEIFSTYGTVKSIE 677
+H+ ++ + TRDHI+ +F+ G ++ ++
Sbjct: 12 LHVANISTSATRDHIYNMFNYLGKIQDLK 40
>Z36948-6|CAA85414.2| 452|Caenorhabditis elegans Hypothetical
protein D2089.1a protein.
Length = 452
Score = 29.5 bits (63), Expect = 3.4
Identities = 8/29 (27%), Positives = 20/29 (68%)
Frame = +3
Query: 591 IHIGRLTLNVTRDHIHEIFSTYGTVKSIE 677
+H+ ++ + TRDHI+ +F+ G ++ ++
Sbjct: 12 LHVANISTSATRDHIYNMFNYLGKIQDLK 40
>Z82060-3|CAB04883.1| 206|Caenorhabditis elegans Hypothetical
protein T27F6.4 protein.
Length = 206
Score = 28.7 bits (61), Expect = 5.9
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = +1
Query: 451 LEIDHQQETKKNLCYLYQMTKLKLRKN--RNDLQDVRSENAHHHHDQL 588
LE+ + ++KN+ +T LK RK + L V S + HHHH L
Sbjct: 80 LELKKKDRSEKNV-----VTNLKYRKPTANHHLDSVHSSSEHHHHHHL 122
>AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical
protein Y111B2A.18 protein.
Length = 258
Score = 28.7 bits (61), Expect = 5.9
Identities = 17/71 (23%), Positives = 32/71 (45%)
Frame = +3
Query: 588 RIHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNGRGYAYVELIMLMKQKML*S 767
++++G L +V + +IF YG +K ++ R G +A+VE +
Sbjct: 10 KVYVGNLPGDVREKEVEDIFHKYGRIKYVDIKSGR-----GPAFAFVEFEDHRDAEDAVR 64
Query: 768 TWTGXQIDGQR 800
G + DG+R
Sbjct: 65 ARDGYEFDGRR 75
>AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein.
Length = 258
Score = 28.7 bits (61), Expect = 5.9
Identities = 17/71 (23%), Positives = 32/71 (45%)
Frame = +3
Query: 588 RIHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNGRGYAYVELIMLMKQKML*S 767
++++G L +V + +IF YG +K ++ R G +A+VE +
Sbjct: 10 KVYVGNLPGDVREKEVEDIFHKYGRIKYVDIKSGR-----GPAFAFVEFEDHRDAEDAVR 64
Query: 768 TWTGXQIDGQR 800
G + DG+R
Sbjct: 65 ARDGYEFDGRR 75
>Z92822-7|CAH10786.1| 601|Caenorhabditis elegans Hypothetical
protein W06F12.1d protein.
Length = 601
Score = 28.3 bits (60), Expect = 7.8
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +1
Query: 532 RNDLQDVRSENAHHHHDQLVSTL 600
+N +Q + + AHHHH QLV +
Sbjct: 126 QNLVQQQQQQQAHHHHQQLVGEM 148
>Z83244-9|CAH10804.1| 601|Caenorhabditis elegans Hypothetical
protein W06F12.1d protein.
Length = 601
Score = 28.3 bits (60), Expect = 7.8
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +1
Query: 532 RNDLQDVRSENAHHHHDQLVSTL 600
+N +Q + + AHHHH QLV +
Sbjct: 126 QNLVQQQQQQQAHHHHQQLVGEM 148
>Z83244-1|CAB05827.2| 634|Caenorhabditis elegans Hypothetical
protein W06F12.1a protein.
Length = 634
Score = 28.3 bits (60), Expect = 7.8
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +1
Query: 532 RNDLQDVRSENAHHHHDQLVSTL 600
+N +Q + + AHHHH QLV +
Sbjct: 159 QNLVQQQQQQQAHHHHQQLVGEM 181
>U64841-1|AAB04845.2| 357|Caenorhabditis elegans Serpentine
receptor, class t protein13 protein.
Length = 357
Score = 28.3 bits (60), Expect = 7.8
Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 5/81 (6%)
Frame = -2
Query: 342 SWMMKMNVMNFLSYWMMTERMTLKNYLMN-----FHYYHCCWSLSHLSFSCFLWVSSSLS 178
SW NV N S++ T+ N L++ + Y C + +S +W+ S
Sbjct: 181 SWFFDPNVGNDPSFYHNIPH-TINNLLVSASSTPLYIYLCYHLIFKFGYSTSMWLYRSKQ 239
Query: 177 QLQAKAIYF*PFSTYYVFIYV 115
Q+ +A+ F +IYV
Sbjct: 240 QIVIQAVILCSFHAVAAYIYV 260
>U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform b protein.
Length = 126
Score = 28.3 bits (60), Expect = 7.8
Identities = 14/71 (19%), Positives = 28/71 (39%)
Frame = +3
Query: 585 TRIHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNGRGYAYVELIMLMKQKML* 764
T + I L+ T + + F YG + + P D+ + +G+ +V +
Sbjct: 19 TSLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDK-YSRQSKGFGFVRFYERRDAEHAL 77
Query: 765 STWTGXQIDGQ 797
G +DG+
Sbjct: 78 DRTDGKLVDGR 88
>U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform a protein.
Length = 196
Score = 28.3 bits (60), Expect = 7.8
Identities = 14/71 (19%), Positives = 28/71 (39%)
Frame = +3
Query: 585 TRIHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNGRGYAYVELIMLMKQKML* 764
T + I L+ T + + F YG + + P D+ + +G+ +V +
Sbjct: 19 TSLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDK-YSRQSKGFGFVRFYERRDAEHAL 77
Query: 765 STWTGXQIDGQ 797
G +DG+
Sbjct: 78 DRTDGKLVDGR 88
>AF145376-1|AAD39815.1| 634|Caenorhabditis elegans LIT-1 protein.
Length = 634
Score = 28.3 bits (60), Expect = 7.8
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +1
Query: 532 RNDLQDVRSENAHHHHDQLVSTL 600
+N +Q + + AHHHH QLV +
Sbjct: 159 QNLVQQQQQQQAHHHHQQLVGEM 181
>AF022969-2|AAB69893.2| 354|Caenorhabditis elegans Hypothetical
protein C29G2.4 protein.
Length = 354
Score = 28.3 bits (60), Expect = 7.8
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
Frame = -2
Query: 336 MMKMNVMNFLSYWMMTERMTLKNYLMNFHYYHCCWSLSH-LSFSCFLWVSSSLSQLQAKA 160
M+ N +L+Y + TL L Y+H C+ L +S +W+ S Q+ A+
Sbjct: 189 MIGNNPKIYLNYTTVVNN-TLSTVLTTGMYFHLCYYLIFKFGYSTSMWLYKSKRQIIAQG 247
Query: 159 IY--F*PFSTYYVFIYV 115
I F ST ++ YV
Sbjct: 248 IILTFFHASTSIIYEYV 264
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,694,028
Number of Sequences: 27780
Number of extensions: 286694
Number of successful extensions: 916
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 915
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2265843888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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