Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP10_F_F14
(891 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_03_0280 - 14546334-14546815,14546894-14547560,14550333-145517... 36 0.057
11_01_0545 + 4308167-4308496 32 0.70
03_06_0074 - 31476094-31476215,31477803-31478238,31478438-314784... 32 0.70
08_02_0824 + 21561699-21562415,21563294-21563362,21563424-215634... 31 1.6
02_02_0183 + 7576901-7576908,7577666-7578176 31 1.6
04_03_1017 + 21747044-21748051 30 2.1
12_02_0010 - 12275652-12276221,12276804-12276935 30 2.8
03_06_0642 + 35239658-35240083,35240167-35240238,35240305-352409... 29 5.0
02_05_1008 - 33461225-33462334 29 5.0
01_05_0602 + 23577328-23579805 29 5.0
11_04_0014 - 12253341-12253358,12253520-12253729,12254388-122545... 29 6.6
10_08_0483 + 18230383-18230874 28 8.7
04_03_0969 + 21331989-21332674,21333090-21333194,21333269-213333... 28 8.7
>01_03_0280 -
14546334-14546815,14546894-14547560,14550333-14551754,
14552831-14553127
Length = 955
Score = 35.5 bits (78), Expect = 0.057
Identities = 22/64 (34%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Frame = +1
Query: 310 PRRHRKPPTL*KTRSRRRASLLVE-PRNPPTMLLAQLPMQSTPQSTPSTRNFRRCRLQQE 486
PRRHR P + R RR A+ + P PP + P +TP T N R + E
Sbjct: 13 PRRHRHGPATPRRRRRRHAAAVATPPPPPPRRRANRCPDAATPPLTNENENDRTNESENE 72
Query: 487 RLRT 498
RT
Sbjct: 73 NDRT 76
>11_01_0545 + 4308167-4308496
Length = 109
Score = 31.9 bits (69), Expect = 0.70
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +2
Query: 293 CRATCRREGTGSRPRCRRPGQEGGRAYWWSREIRQRCC 406
C + TG RCR G G A W S++I+ CC
Sbjct: 61 CIPVAACDDTGCAIRCRDLGYNPGSACWTSKDIKLYCC 98
>03_06_0074 -
31476094-31476215,31477803-31478238,31478438-31478485,
31478569-31479018,31479567-31479681,31480052-31480905
Length = 674
Score = 31.9 bits (69), Expect = 0.70
Identities = 23/76 (30%), Positives = 32/76 (42%)
Frame = +1
Query: 226 ESQAHFVASARRLHLSSTGRRRMQSNLPPRRHRKPPTL*KTRSRRRASLLVEPRNPPTML 405
E++A A ARR SS+ S PP RKPP + ++R L P N P
Sbjct: 10 EAEADLQALARRFSFSSSSSPS-PSPSPPSSSRKPPLPPRRSPQKRPGLPTIPENGPPAG 68
Query: 406 LAQLPMQSTPQSTPST 453
+A TP++
Sbjct: 69 MATATATPKRTRTPTS 84
>08_02_0824 +
21561699-21562415,21563294-21563362,21563424-21563459,
21564533-21564600,21565259-21565277,21565662-21565763,
21566173-21566288,21566501-21566595,21568093-21568264,
21568413-21568493,21569732-21569801,21570106-21570132
Length = 523
Score = 30.7 bits (66), Expect = 1.6
Identities = 18/52 (34%), Positives = 24/52 (46%)
Frame = +1
Query: 280 GRRRMQSNLPPRRHRKPPTL*KTRSRRRASLLVEPRNPPTMLLAQLPMQSTP 435
G S+LP RR R+PP RRR +P +PP LP ++P
Sbjct: 10 GTSSSSSSLPSRRRRRPP---PRLGRRRGGDDQQPPHPPKASSEALPCAASP 58
>02_02_0183 + 7576901-7576908,7577666-7578176
Length = 172
Score = 30.7 bits (66), Expect = 1.6
Identities = 16/36 (44%), Positives = 18/36 (50%)
Frame = +2
Query: 296 RATCRREGTGSRPRCRRPGQEGGRAYWWSREIRQRC 403
R R+ G G R R RR G GG A W R+ RC
Sbjct: 47 RRPARQRGGGGRRRRRRCGGGGGGAARWIRQPLARC 82
>04_03_1017 + 21747044-21748051
Length = 335
Score = 30.3 bits (65), Expect = 2.1
Identities = 27/86 (31%), Positives = 31/86 (36%), Gaps = 7/86 (8%)
Frame = +1
Query: 307 PPRRHRKPPTL*KTRSRRRASLLVEPRNPPTMLLAQLPMQST-------PQSTPSTRNFR 465
PPRR P T RR AS P +PP + Q T P TPST
Sbjct: 212 PPRRAASPDYSPSTPPRRAASPDYTPMSPPRRAASPDYTQMTPPRRAASPDYTPSTPPPP 271
Query: 466 RCRLQQERLRTPPTKPXLMGRRSLTL 543
R TPP+ P S T+
Sbjct: 272 RAASPDYTPSTPPSSPLPSAAESFTV 297
>12_02_0010 - 12275652-12276221,12276804-12276935
Length = 233
Score = 29.9 bits (64), Expect = 2.8
Identities = 27/86 (31%), Positives = 34/86 (39%), Gaps = 5/86 (5%)
Frame = +1
Query: 211 QKCSAESQAHFVASARRLHLSSTGRRRMQSNLPPRRH---RKP--PTL*KTRSRRRASLL 375
QK AH + + H+ S RR+ S L P+ R P L T A+
Sbjct: 43 QKVCRCQPAHTLGPPLKRHIRSKSGRRVSSQLQPKEKEAVRSPCDVILQCTTVGYSAADK 102
Query: 376 VEPRNPPTMLLAQLPMQSTPQSTPST 453
PR P T LLA S+P S T
Sbjct: 103 AAPRRPTTSLLALATAASSPSSAEVT 128
>03_06_0642 +
35239658-35240083,35240167-35240238,35240305-35240919,
35241253-35241435,35241604-35241663,35241733-35241936,
35242497-35242745,35243609-35243707,35243760-35243858,
35244463-35244480,35244668-35244862,35244981-35245073,
35245265-35245531,35245884-35246102
Length = 932
Score = 29.1 bits (62), Expect = 5.0
Identities = 27/84 (32%), Positives = 35/84 (41%)
Frame = +1
Query: 247 ASARRLHLSSTGRRRMQSNLPPRRHRKPPTL*KTRSRRRASLLVEPRNPPTMLLAQLPMQ 426
A R ST R + P RR PPT RSR R+ P PP Q P
Sbjct: 30 ARTPRAPFPSTSRSSNPYSFPDRR--PPPT---PRSRSRS-----PLPPPEQQKQQQPPP 79
Query: 427 STPQSTPSTRNFRRCRLQQERLRT 498
+TP P R+ R +++ +RT
Sbjct: 80 TTPPPAPRRRDPRYAGVRRGDVRT 103
>02_05_1008 - 33461225-33462334
Length = 369
Score = 29.1 bits (62), Expect = 5.0
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +1
Query: 280 GRRRMQSNLPPRRHRKPPTL*KTRSRRRASLLVE-PRNPPTMLLAQLPMQSTPQSTPST 453
G +++ L ++ ++P T RSRRR L + P+ T L LP+ P S PS+
Sbjct: 5 GPPSLRAGLQQQQQQQPGT--PGRSRRRPDLTLPLPQRDLTSLAVPLPLPLPPSSAPSS 61
>01_05_0602 + 23577328-23579805
Length = 825
Score = 29.1 bits (62), Expect = 5.0
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Frame = +1
Query: 298 SNLP-PRRHRKPPTL*KTRSRRRASLLVEPRNPPTMLLAQLPMQSTPQSTPSTRNFRRCR 474
++LP P H +P +RS RR + P PP L ++L +PS R+ R R
Sbjct: 2 ASLPLPALHHEPLL---SRSHRR----LPPSPPPPPLPSRLAAAHPSAPSPSPRDDERLR 54
Query: 475 LQQERLRT 498
L+ E LR+
Sbjct: 55 LRAEELRS 62
>11_04_0014 -
12253341-12253358,12253520-12253729,12254388-12254523,
12254631-12254752,12254789-12254842,12254872-12255161,
12255737-12255948,12256008-12256475,12256560-12256856,
12257467-12258329,12258417-12258490,12258616-12258650,
12259024-12259087,12259452-12259733,12259870-12259946,
12260045-12260325
Length = 1160
Score = 28.7 bits (61), Expect = 6.6
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = -2
Query: 545 CSVKDLLPIXYGFVGGVRSLSCCKRHLRKFLVDGVDCGVLCI 420
C L+PI FV R C K+ LR+ + GVD +LC+
Sbjct: 818 CQCLSLMPIASLFVVSFR---CGKQRLREARIQGVDYLILCL 856
>10_08_0483 + 18230383-18230874
Length = 163
Score = 28.3 bits (60), Expect = 8.7
Identities = 19/82 (23%), Positives = 37/82 (45%)
Frame = +1
Query: 280 GRRRMQSNLPPRRHRKPPTL*KTRSRRRASLLVEPRNPPTMLLAQLPMQSTPQSTPSTRN 459
G ++ S PPRR P + R RRR + ++ P + ++ + + P+
Sbjct: 9 GIPKLNSTTPPRRMDHP----RRRRRRRRRRRHKHKHKPDEVKEEMVVDALPKEEEEEER 64
Query: 460 FRRCRLQQERLRTPPTKPXLMG 525
+R + ++++L T LMG
Sbjct: 65 GKRRKKKRKKLVTVKLSDELMG 86
>04_03_0969 +
21331989-21332674,21333090-21333194,21333269-21333391,
21333458-21333628,21333710-21333839,21333926-21334135,
21334700-21334855
Length = 526
Score = 28.3 bits (60), Expect = 8.7
Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 1/70 (1%)
Frame = +1
Query: 307 PPRRHRKPPTL*KTRSRRRASLLVEPRNPPTMLLAQLPMQSTPQSTPSTRNFRRCRLQ-Q 483
PP+ KPP + R A+ P+ P ++ P Q P + + R+ +
Sbjct: 68 PPKHPGKPPKDIQEVPSRAAAAAAAPKAQPAQVIQAPPPQPPPSESIQIETGKEHRITFR 127
Query: 484 ERLRTPPTKP 513
E+ PP P
Sbjct: 128 EQQHQPPQPP 137
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,759,920
Number of Sequences: 37544
Number of extensions: 291629
Number of successful extensions: 1048
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1010
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1043
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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