Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP10_F_F13
(1117 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0937 + 22801526-22802461 32 0.94
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330... 32 0.94
07_01_0674 + 5047503-5047646,5047808-5047901,5048743-5048828,504... 31 1.2
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 30 2.9
07_03_1136 + 24218601-24218734,24218769-24219906 30 3.8
07_03_0177 - 14770777-14772045 29 5.0
12_02_1174 - 26696869-26698191 29 6.7
11_02_0065 - 7938007-7938393,7939292-7939435,7940597-7940665,794... 29 6.7
09_06_0277 - 21983049-21983080,21983250-21984788,21986619-219866... 29 8.8
06_03_1326 - 29355467-29355817 29 8.8
01_01_0570 - 4231100-4232560 29 8.8
>08_02_0937 + 22801526-22802461
Length = 311
Score = 31.9 bits (69), Expect = 0.94
Identities = 18/68 (26%), Positives = 18/68 (26%)
Frame = -2
Query: 1116 PPPPPXXXXXXXXXXXXXXXFXXXXXPPPPPXXXXXFFXXXXXXXXXXXXPXPPPPPXXX 937
PPP P PPPPP F P PPP P
Sbjct: 8 PPPAPADAEAVPLFYCYECESTVSLPPPPPPPSRPLFCPRCRGEFLEEENPNPPPEPEEE 67
Query: 936 XXXLSXPP 913
S PP
Sbjct: 68 EEVSSPPP 75
>08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,
3308247-3308315,3308427-3308513,3308753-3308858,
3309118-3309237,3309327-3309406,3309497-3309878,
3310746-3310814,3311460-3312202
Length = 644
Score = 31.9 bits (69), Expect = 0.94
Identities = 19/67 (28%), Positives = 19/67 (28%)
Frame = -3
Query: 1115 PPPPPXXXXXXXXPXXXXXXFXXXXXPPPPPXXXXXFXXXXXXXXXXXXPPXPXXPPXXX 936
PPPPP P PPPPP PP P PP
Sbjct: 82 PPPPPQMYYQPPPPPPPYGVNSSQPPPPPPP------PPSPPPSAPPPPPPPPTQPPPRE 135
Query: 935 XXFXPPP 915
PPP
Sbjct: 136 AQLAPPP 142
Score = 29.9 bits (64), Expect = 3.8
Identities = 19/83 (22%), Positives = 20/83 (24%)
Frame = -2
Query: 1116 PPPPPXXXXXXXXXXXXXXXFXXXXXPPPPPXXXXXFFXXXXXXXXXXXXPXPPPPPXXX 937
PPPP PPPPP PPPPP
Sbjct: 30 PPPPQQPAYGHMPPPQGAPPPFLAPPPPPPPGPPPPHQPQFNFGPGPPQQQQPPPPPQMY 89
Query: 936 XXXLSXPPXFXXXFFXXXXXPPP 868
PP + PPP
Sbjct: 90 YQPPPPPPPYGVNSSQPPPPPPP 112
Score = 29.1 bits (62), Expect = 6.7
Identities = 18/70 (25%), Positives = 19/70 (27%), Gaps = 2/70 (2%)
Frame = -1
Query: 1117 PPPPPXXXXXXXXXPXXXXXXXXXXXXPPPPXXXXXFFXXXXXP--XXXXXXPPPPXXPX 944
PPPPP P PPP + P PPPP P
Sbjct: 54 PPPPPPPGPPPPHQPQFNFGPGPPQQQQPPPPPQMYYQPPPPPPPYGVNSSQPPPPPPPP 113
Query: 943 XXXXXSXXPP 914
S PP
Sbjct: 114 PSPPPSAPPP 123
>07_01_0674 + 5047503-5047646,5047808-5047901,5048743-5048828,
5049380-5049429,5049517-5049586,5049668-5049749,
5049867-5050267,5050414-5050941,5051823-5052044
Length = 558
Score = 31.5 bits (68), Expect = 1.2
Identities = 16/57 (28%), Positives = 16/57 (28%)
Frame = -3
Query: 1115 PPPPPXXXXXXXXPXXXXXXFXXXXXPPPPPXXXXXFXXXXXXXXXXXXPPXPXXPP 945
PPPPP P PPPPP PP P PP
Sbjct: 205 PPPPPPPLPASSEPVDPSAASLPPLPPPPPPPPKPANIAGAPGLPLPPPPPPPPGPP 261
>10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 30.3 bits (65), Expect = 2.9
Identities = 19/67 (28%), Positives = 19/67 (28%)
Frame = -3
Query: 1115 PPPPPXXXXXXXXPXXXXXXFXXXXXPPPPPXXXXXFXXXXXXXXXXXXPPXPXXPPXXX 936
PPPPP P PPPPP PP P PP
Sbjct: 563 PPPPPPPPPPPPLPQSNYASSQPPPPPPPPP---------LPNCLVPSPPPPPPPPPILP 613
Query: 935 XXFXPPP 915
PPP
Sbjct: 614 NRSVPPP 620
Score = 29.9 bits (64), Expect = 3.8
Identities = 19/68 (27%), Positives = 20/68 (29%)
Frame = -2
Query: 1116 PPPPPXXXXXXXXXXXXXXXFXXXXXPPPPPXXXXXFFXXXXXXXXXXXXPXPPPPPXXX 937
PPPPP PPPPP + P PPPPP
Sbjct: 544 PPPPPPPPPPPSGNKPAFSPPPPPPPPPPPPLPQSNY-------ASSQPPPPPPPPPLPN 596
Query: 936 XXXLSXPP 913
S PP
Sbjct: 597 CLVPSPPP 604
>07_03_1136 + 24218601-24218734,24218769-24219906
Length = 423
Score = 29.9 bits (64), Expect = 3.8
Identities = 18/67 (26%), Positives = 20/67 (29%)
Frame = +1
Query: 916 GGGXXXXXXXGGXXGXGGXXXXXXXXXXXKKXXXXXGGGGGXXXXXKXXXXXXGXXXXXX 1095
GGG GG G GG ++ GGGGG G
Sbjct: 190 GGGGGPGRAPGGGGGGGGLGGGGGEGGAPERVIGGGGGGGGALKCVVGGGGGGGGALKRA 249
Query: 1096 XXGGGGG 1116
GGGG
Sbjct: 250 AGSGGGG 256
>07_03_0177 - 14770777-14772045
Length = 422
Score = 29.5 bits (63), Expect = 5.0
Identities = 19/67 (28%), Positives = 19/67 (28%)
Frame = +1
Query: 916 GGGXXXXXXXGGXXGXGGXXXXXXXXXXXKKXXXXXGGGGGXXXXXKXXXXXXGXXXXXX 1095
GGG GG G GG GGGGG G
Sbjct: 166 GGGYGKGGGLGGGIGKGGGLGGGFGKSGGLGGGGGLGGGGGLGGGIGKGGGLGGGFGKGG 225
Query: 1096 XXGGGGG 1116
GGGGG
Sbjct: 226 GLGGGGG 232
>12_02_1174 - 26696869-26698191
Length = 440
Score = 29.1 bits (62), Expect = 6.7
Identities = 15/56 (26%), Positives = 15/56 (26%)
Frame = -3
Query: 1112 PPPPXXXXXXXXPXXXXXXFXXXXXPPPPPXXXXXFXXXXXXXXXXXXPPXPXXPP 945
PPPP P PPPPP PP P PP
Sbjct: 221 PPPPPPTVPPRTPGDTPAVVEPKPQPPPPPPRAPVKMPRVLEPKPSPPPPSPLPPP 276
>11_02_0065 -
7938007-7938393,7939292-7939435,7940597-7940665,
7940762-7940809,7941488-7941584,7941688-7941767,
7941841-7941912,7942256-7942350,7943903-7943984,
7945176-7945209,7945255-7945262,7945657-7946058
Length = 505
Score = 29.1 bits (62), Expect = 6.7
Identities = 12/31 (38%), Positives = 13/31 (41%)
Frame = -2
Query: 960 PPPPPXXXXXXLSXPPXFXXXFFXXXXXPPP 868
PPPPP + PP FF PPP
Sbjct: 53 PPPPPQVIRVFAAAPPPPPAAFFAAVPPPPP 83
>09_06_0277 -
21983049-21983080,21983250-21984788,21986619-21986655,
21987612-21987665,21987781-21987893,21988272-21988660,
21988783-21988903,21989245-21989342,21989963-21990153
Length = 857
Score = 28.7 bits (61), Expect = 8.8
Identities = 12/33 (36%), Positives = 12/33 (36%)
Frame = -2
Query: 966 PXPPPPPXXXXXXLSXPPXFXXXFFXXXXXPPP 868
P PPPPP PP F PPP
Sbjct: 375 PNPPPPPPPMSPSCLLPPIIPAPTFTYSSPPPP 407
>06_03_1326 - 29355467-29355817
Length = 116
Score = 28.7 bits (61), Expect = 8.8
Identities = 19/67 (28%), Positives = 21/67 (31%)
Frame = +1
Query: 916 GGGXXXXXXXGGXXGXGGXXXXXXXXXXXKKXXXXXGGGGGXXXXXKXXXXXXGXXXXXX 1095
GGG GG G GG + GGGGG + G
Sbjct: 5 GGGGGGGGKGGGGGGGGGKGGGGGSGGGGRS--GGGGGGGGGKGGGEGGSGKYGGGYSGG 62
Query: 1096 XXGGGGG 1116
GGGGG
Sbjct: 63 HAGGGGG 69
>01_01_0570 - 4231100-4232560
Length = 486
Score = 28.7 bits (61), Expect = 8.8
Identities = 22/82 (26%), Positives = 22/82 (26%)
Frame = +1
Query: 871 GGXXXXXKKXXXKXXGGGXXXXXXXGGXXGXGGXXXXXXXXXXXKKXXXXXGGGGGXXXX 1050
GG K GGG GG G GG GGGGG
Sbjct: 41 GGEGCGDKHSTATISGGGVGVGGGEGGGVGVGGGVGGGTGGGAA--GGLGGGGGGGGGLG 98
Query: 1051 XKXXXXXXGXXXXXXXXGGGGG 1116
G GGGGG
Sbjct: 99 GSGGLGGGGMGGSGGFGGGGGG 120
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.316 0.158 0.524
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,300,382
Number of Sequences: 37544
Number of extensions: 407556
Number of successful extensions: 856
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 294
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 636
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3363032448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
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