Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_F12
         (878 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces ...    61   2e-10
SPAC4D7.12c |fet5||transcription factor Fet5|Schizosaccharomyces...    44   4e-05
SPBC119.15 |||AAA family ATPase, unknown biological role|Schizos...    37   0.004
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc...    29   0.87 
SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130 |S...    27   2.7  
SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter ...    27   4.7  
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac...    26   6.1  
SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomy...    26   8.1  

>SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 315

 Score = 61.3 bits (142), Expect = 2e-10
 Identities = 27/47 (57%), Positives = 33/47 (70%)
 Frame = +2

Query: 686 LGPPGAGKTTYCMKMSDMLKTLGRQVIIVXLDPANDTMNYKPDIDIR 826
           +GPPG+GK+TYC  M  +L  +GR  IIV LDPAND + Y   IDIR
Sbjct: 8   VGPPGSGKSTYCFGMYQLLSAIGRSSIIVNLDPANDFIKYPCAIDIR 54


>SPAC4D7.12c |fet5||transcription factor Fet5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 276

 Score = 43.6 bits (98), Expect = 4e-05
 Identities = 17/46 (36%), Positives = 29/46 (63%)
 Frame = +2

Query: 689 GPPGAGKTTYCMKMSDMLKTLGRQVIIVXLDPANDTMNYKPDIDIR 826
           G   +GK+T+C  +   +K++GR   +V LDPA +   ++P +DIR
Sbjct: 10  GVASSGKSTFCGALMSYMKSVGRSCHLVNLDPAAENFEWEPTVDIR 55


>SPBC119.15 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 367

 Score = 36.7 bits (81), Expect = 0.004
 Identities = 17/47 (36%), Positives = 29/47 (61%)
 Frame = +2

Query: 686 LGPPGAGKTTYCMKMSDMLKTLGRQVIIVXLDPANDTMNYKPDIDIR 826
           +G  G+GKTT+  +++  L +  +   I+ LDPA   + Y+ +IDIR
Sbjct: 14  VGMAGSGKTTFMQQLNAHLHSKNKPPYILNLDPAVRNLPYEANIDIR 60


>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 822

 Score = 29.1 bits (62), Expect = 0.87
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = +2

Query: 230 IMKNLKIQNSEAPNNLFKSVSAEIDDVTTDIVIAECSDK 346
           + KN K     +P N F +++ ++DD++ D   +E S+K
Sbjct: 110 VRKNKKSSKKASPKNAFDALADDMDDLSLDEEESESSEK 148


>SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1206

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 18/83 (21%), Positives = 36/83 (43%)
 Frame = +2

Query: 185 CDKLE*QAIRMDLPDIMKNLKIQNSEAPNNLFKSVSAEIDDVTTDIVIAECSDKVFLVVS 364
           CD    + + +DL   ++NL +Q   +P N    +   ++ V+T  +     + V+L  +
Sbjct: 637 CDDATVRVLSLDLYTTLENLSVQALSSPANSLCIIPMNVNGVSTLYLHIGLMNGVYL-RT 695

Query: 365 QYQKMGSMLMVVRDRINGPHGIE 433
                   L+  R R  GP  ++
Sbjct: 696 VIDVTSGQLLDTRTRFLGPRAVK 718


>SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter
           Str2 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 597

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 14/42 (33%), Positives = 18/42 (42%)
 Frame = -2

Query: 265 GFRILYFQIFHNIWEIHPDSLLFQFITIVKIQISLVQNC*YD 140
           GF +L     H+   + PDS +    TI      LV  C YD
Sbjct: 292 GFTLLLLPFSHSSQVVSPDSTILTLFTITLSIALLVTLCFYD 333


>SPAC18B11.10 |tup11||transcriptional corepressor
           Tup11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 614

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
 Frame = +1

Query: 346 SVFSCISVSKNGKY-ANGCQRS 408
           SV  C+  S NGKY A GC ++
Sbjct: 314 SVVCCVKFSNNGKYLATGCNQA 335


>SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 802

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = +2

Query: 305 DVTTDIVIAECSDKVFLVVSQYQKMGSMLMVVRDRINGPHGIEDVYSTKV 454
           DVTT+ ++  CSD   L   +++ +    + +RD +     +ED   T V
Sbjct: 293 DVTTEEILLCCSDLQVLGKKEFRDILRWRLKIRDEMGIGKKVEDEQKTVV 342


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,334,701
Number of Sequences: 5004
Number of extensions: 67925
Number of successful extensions: 213
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)