Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_F11
         (980 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha ...    24   6.0  
AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha ...    24   8.0  
AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative different...    24   8.0  

>AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha 1
           chain protein.
          Length = 1024

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = +2

Query: 680 PXGPPXRLGXGGXPGFXPPPXGGG 751
           P  PP R G  G PGF  P    G
Sbjct: 708 PQLPPQRKGPPGPPGFNGPKGDKG 731


>AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha 1
           chain precursor protein.
          Length = 801

 Score = 23.8 bits (49), Expect = 8.0
 Identities = 13/29 (44%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
 Frame = +2

Query: 680 PXGPPXRLGXGGXPGFXPP--PXGGGXXR 760
           P G P R G  G PG   P    GGG  R
Sbjct: 381 PKGEPGRDGIPGQPGIAGPAGAPGGGEGR 409


>AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative
           differentiation regulator protein.
          Length = 1283

 Score = 23.8 bits (49), Expect = 8.0
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = +2

Query: 686 GPPXRLGXGGXPGFXPPP 739
           GP   L  G  PG  PPP
Sbjct: 109 GPNHHLPPGASPGLVPPP 126


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 622,834
Number of Sequences: 2352
Number of extensions: 9020
Number of successful extensions: 15
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 563,979
effective HSP length: 65
effective length of database: 411,099
effective search space used: 107296839
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)